RNA id: XM_026939612.2


Basic Information

Item Value
RNA id XM_026939612.2
length 2580
RNA type mRNA
GC content 0.45
exon number 12
gene id ccdc125
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1892268 ~ 1900064 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACAGTTTTTGTagtgatagtttttttttgtgatggtGATAGCGTCTGGAGTTGTTTGAATCTTCAGGAACATGGATATCTTACACAAAAGCACCAGAATAGTGTTATTACACTTTACTCGGTGTAGGTCGTGTATCCTCTGAGGAGAAAATGTTGTAATCCCCCTTTAAAACACATGCAGGAAGGAAAAACCCTGCAGCTCCATTAGATCCGCTTTAGAAGTCGGGCTGGAAGTGTGTGACACACCCGTGTGTGCTGTGTGATCGCCGTGCTGTGGATATGTACAGCCTGTAACCTTCCCAGAATAACAACTTAATCCTTCTGATAGATGCTTTATTTCCGCCATCGTTCCTTTTGCTCTGCTGCTCAGACAGGTGCTCAGGTTACAGGTCAAGCTGGAAATGATGCACGCAGGCCGAGAACAAGCGAGTACCACGGATCAGCCCTCAGAAGATGACATGGCGGAGGGAGATCTCGGGGACGGCACCCGGTCCGTAGGAGGGACCCGTCGGTCACGGAACAGGAGCAAAGGGGACTATTTGGATCTGCTGCCGCAGGCGAAACCCTCCAAATGGGGCAGTGAGGATGGGGGTGGATCTTTCTCCTGGACATCATGCAGTGCAATGTACACCGCTTTTAGAAAGGAGCTGGAGGCAGAGAGGATCTCTCAGTGGAGGATCAGAGACTCAGAGAGCAGCGCCGGTGAGTCCAGTGAGGCATTGCAGAGGAGACTGCAGGAAGTAACAGAGGAAGTGGCGCTGCTGAGGACAGAACTGGAAGTGACGCATCGACATCTTGAAGGCAAACATGAAGCTCTGAGAATCCTGCAAGGCCAAGCCATATTAGATAAAGCCACCAGTCACACCAAGATCTTGCTGCAGAAGAGTGAAGAGCGGACCAAAGCTCTGGAAAAGGAAGTGAACGCTTTGCAGTGGGAGATCACCTTTAACCAGGTGCAGTTTAAGAACATAGAGCACGCGTGGGAGCTGAAATACGACAGAGTGTGTGCAGAGAACCAGGCCTTGAGCAAAGCTCTTGATGAGAGACTGGAACAGTTCCAGGAGCTGCGCAGAGAGAACACGTcATTGAGTCAGCAGTGTCTGGAGCTCCTGGGCTTACTGAGCGCTCGGGAGAGAAGAGACTTCCAGAAGACCCAGCCACCATGCAGTCAAAGCAGAGAGGGATCTGCACTGGAGCTGGCTGTGTATGGGGCATGTAAGTGCAGCTCCAACGCAGGAGAGCCGTGTTCCTGTGCGAAGAGCGCAGCTGCAAGCCGCAAACAAGTCCTTCAGCTTAAACAAGAGctggagctgcagaggaggaggaaggacgAAGCGTACGTGATGGTGGATGCGTTCCGGATCGCATTCGAGCAGCAGCTGAGGAGAGGGAGCGAGAAAGTGCTGCAGCTGGCAgaaagcgacacacacacagcagacagaGGGAAGCAGGGCTCTGCTGGTGTGACTCAGACGCTGAAGAGATTTCTGCCGTCTCTCAGAGAAGGAAAAGTCCCGAGCAACCCGAAAGAAACCCTGCAGCTGCTGCTCGATCTGTTGAGCGATAAAGAGGAGGCCTTGGCCCATCAGAGGAAGGTCAGCTACATGTTAGCACGGAGCTATGAGGACCTGGAGAAACGTCTTCAGGCACAGCTCAAGGAGCTGGACATCTCACACAATGGGGCTGAATTTAAACAGGAAGCGGACAGATCCAAATGCATAGTGGACTCTAAAGCTGATCATCCGTCACGTTCACGTGAAAATACACCGGTGGTCATGGACGACCATGAAGAGAAGACGAGAATGGTGGGTTCACAAAATGAGGGCGAGGGGTAAACAGGAGGAGTAACGAGATCTTGAGACCTTAAGAAAAGAGTGTAATGAACATTCTGAATGTTGAAATGTTATAAGACAATCACAGGACTGATATTtgagttattatgtaataaatgcCTACTACTGTTTACAAGGCGTTGTAGATGATTTAGATATGGTTTGTTTTGCACATTTGTTCATCTTTATTTCAAATCTGCTTAagttgaaatgatttttttgtgtcaAATAAGCCTGCTGACAGGGGGTggaaaagtactgagaaattatacttgaAAGTATAAATCTTACTAAACTAAAAGTATCCAAccaaaaatatacttttaaatgtaatcatGTATTAACAAGtaatatggaaatgtttttaacagATGATTGGATGGTTttaaactaaaatgtaaatcaaatacaaataaaatgtatctgTTCtgatgtatagtgtatagtcaATTACTAGATGAGAAGTGAAGAGATCTTTGAGATTTTATATGAGAACTTTGTAGGTCTAAATAATGTAAagagtaaatatatatttgtccCCCTTGGAATATAGATAGGTAAGAgtattcaatttaattaaaaaatactcaGGGAAATTATAAATAACCCAAAACTAATACTTAATTATATTAGCAatgtacaattactcaagtataaTTCCACTCCTGTCTGCTGAACCATGAAGCACAGAATTGAAATCTgcctttttaatcattttatgtaCTTtgatacacaaaataaaattttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412497 lncRNA downstream 16513 1794830 ~ 1875756 (-) True G348094
TU412483 lncRNA downstream 21123 1790117 ~ 1871146 (-) True G348092
TU412476 lncRNA downstream 26195 1785025 ~ 1866074 (-) True G348088
TU412259 lncRNA downstream 125340 1763211 ~ 1766929 (-) True G347905
TU412254 lncRNA downstream 149969 1734913 ~ 1742300 (-) True G347900
TU412516 lncRNA upstream 81990 1982054 ~ 2021135 (-) False arvcfb
TU412574 lncRNA upstream 86119 1986183 ~ 1987047 (-) True G348143
TU412579 lncRNA upstream 133493 2033557 ~ 2033864 (-) True G348147
TU412614 lncRNA upstream 211599 2111663 ~ 2181860 (-) True G348180
TU412635 lncRNA upstream 241552 2141616 ~ 2142102 (-) True G348200
XM_034299290.1 mRNA downstream 143 1886652 ~ 1892126 (-) True fam151b
XM_026939783.2 mRNA downstream 143 1887072 ~ 1892126 (-) False fam151b
XM_026939781.2 mRNA downstream 144 1886652 ~ 1892125 (-) False fam151b
XM_026939782.2 mRNA downstream 145 1886652 ~ 1892124 (-) False fam151b
XM_034299265.1 mRNA downstream 181367 1701313 ~ 1710902 (-) False LOC117595719
XM_026939931.2 mRNA upstream 1095 1901159 ~ 1907573 (-) True rad17
XM_034299249.1 mRNA upstream 51565 1951629 ~ 1968139 (-) True erap1b
XM_034299248.1 mRNA upstream 51565 1951629 ~ 1968115 (-) False erap1b
XM_026940309.2 mRNA upstream 83344 1983408 ~ 2127645 (-) False arvcfb
XM_026940310.2 mRNA upstream 83344 1983408 ~ 2127645 (-) False arvcfb
TU412500 other downstream 63624 1827898 ~ 1828645 (-) True G348096
trnak-uuu_19 other downstream 293727 1598470 ~ 1598542 (-) True trnak-uuu_19
XR_003404300.2 other downstream 361875 1507615 ~ 1530394 (-) False LOC113542373
TU412577 other upstream 95838 1995902 ~ 1998470 (-) True G348145
TU412644 other upstream 279479 2179543 ~ 2185944 (-) False LOC113542580
TU412645 other upstream 279479 2179543 ~ 2231567 (-) False LOC113542580
TU412757 other upstream 737691 2637755 ~ 2664375 (-) False zmat4a
TU412979 other upstream 884613 2784677 ~ 2785896 (-) True G348491

Expression Profile