RNA id: XM_026939754.2


Basic Information

Item Value
RNA id XM_026939754.2
length 2468
RNA type mRNA
GC content 0.37
exon number 3
gene id vamp8
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 2191585 ~ 2199551 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGTTTAGCGGAGGAATTCAGGCGGACGAGGAAGAGAAAACGCGGAGAAACCAGGAAGTTCGCGACGCGCTCTGGGTTTTTTGAGAAAGTGCTAAAAGTTTGACGGTTTGTAAACATTTAGCCGGTGGGAATCCGGTGTTTAATGTCGTGTTTTGCTGCAGTTTACTGAATCAGTCGTGGTGTTTGGTTTAGAAGATGGGAGTTGGAGATCCAAACAGTATGGAGCAGGGGGCGTCGGCTTCGGCGGAGGAAGTGGACCGGGTGAAGTCGCTGCAGTCTCAGGTGGATGGCGTGAAAGACATCATGACCCAGAACGTGGACCGAATCCTGGCACGCGGAGAACGACTCGATGATCTGATGGACAAATCTGAGGACCTGCAGGCCGGGGCGCAGAACTTCAAGCACACGTCGCAGAAGGTGGCACGCGCCTACTGGTGGAAGAACGTGAAGCTGATCATGGTGATAGTCGTGATTGTTGTCGTCATCCTGCTCATCATCGTGCTGTTGGCTACAGGAGTGATCCCGACTAGTGCCTCAGCGCCGCTGCCCCCGACAAGCAAACCACCAAATTAACACCTAGGAAATTAACAccttcacactcactcactcacacagacCTACTTTATACCGAAACCTGAAGGCACACACACTTACGTTAGTTCTTAAAAAAGTCCCATTCGGACACACCGCAGGATTTCATGCTGGTCCTGAACCAAAATATTCGCCGTGTCTACAATTTGGCGAAACAAAAGCGCAAACCTTGGTCCGAACTGGATATTGAGACACATTTATATCTCATACAGCTGTGAAATATCGTAGATCTGTCAGATCAGGGTTCGAACGAAATCCTGCAGGAGTGATTCTGCTTCGTAATTTTGATTTTACGCAGAAAACGAAGACGATGCGTCTTTTCTTTACACATTTAGCTCAATCAAAAACATCCGCCGTGATCACGCTTCACACGAAACTCCCAATGCTGCTTACGATGAAGCTCGTTAACATGCGCTTGTTTCCTACCCGCTTTTATTCGTTCACAACATTCGTTCGTTTCCTACAAAACAGCAATATTTCTTTACTTGAATAATCAAACACGAATCCATAGTGTTAGCACACAgtactgtctgtttttcttacaGAATTTCTTGAAACATTCCTAGAATTTATAGGAATATCTAGAAATGAAATCTGAATGCTGGAACTTCAACAGATTTATAAGATGTTACACACTGAAATATCTGGAATTTCACACAGATCACTGGAATTTAAGAAACTCACAAATTTGCATGTTGAAAATATCTGGAAACCTTAAATTAAAGATATTTATAAGTTACATAttgaaaatgttcagaaaattaACCATATTGTTACCAAGATGTTACCATATTTGCTCGAAGCTGTATAGCAAACATACCTGAAAAACCTAAATAATAGCTGGagattaaagatattttatattGAATTAACCCCAAATTAAGAGATTTTAATGTTTAGATGTGGAATTGAACAAATCCAGAAATTTGCCCTGAAATTATGCGATTTAAGGATATTTATTAGaagatatatattaaaaaatatccagAAATTCTAAGAAGATAAATGAAAATTGATtgaatttaaatactttttaactAAATTTGACTGATTAAAATCCAGAAATTAACCACTAATGTCGGAACTTGAAGTTATAATTAAgttgaaaataaattagtaataagttgaataataaaacacttaaaatttgaaattgaaaatatctgaaaatggatcttttttttttttttttttttatataagaaGTATACAATGAAAATATCTGACCTAATGAAGGACAATCTAATATTTACTGTTACAAATATCTGGAAATTAAGCCTGAGAGCTAGAAAGaagttattaaaatgaattcttATTAAAAATAGAGAGGAACTTACATATTGAAAATATCACTTAATGCTGGAAGGTAAGATACCTACAAGATGgtacatgttaataataattataaaataaccCTTAATTCTGAAATGTGTACGTTTTAAACATCGGAAGGATTTCATTTCATCTCTTTGCTGGAaattttcttggtgtttggtcacaacgCGATactttccacacacacttctcagacAACACAATTTTCTCTATATACTAGTgatacagtgagtgtgtgaaatttcCGGACGGGTTTGcccaagtgtttgtgtgtgtccgtgtgtgtgtttgtgtttttacatgatgaaaatgtttttttcgtAACTGTTTCTTTAAAGTTTGAAGGCCGAGTTATAGTTAAAATCAATACGAACAATAGCGCAAATGCACTTTGCTTCAATGTAGGTCTAAGATTTTGCTTTAACATTCCAGTCACTGCTGTAAAAGTCAATATTTCTCTGATTTTCACTGTTACGAAAGAAAAAAACCCGACTCTTTACAGTTCTTTAGTGGCCAGTTTTGAttccaaccttttttttttt

Function

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0006897 endocytosis biological_process
GO:0006906 vesicle fusion biological_process
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function
GO:0000149 SNARE binding molecular_function

KEGG:

id description
K08512 VAMP8; vesicle-associated membrane protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412614 lncRNA downstream 9725 2111663 ~ 2181860 (-) True G348180
TU412635 lncRNA downstream 49483 2141616 ~ 2142102 (-) True G348200
TU412579 lncRNA downstream 157721 2033557 ~ 2033864 (-) True G348147
TU412516 lncRNA downstream 170450 1982054 ~ 2021135 (-) False arvcfb
TU412574 lncRNA downstream 204538 1986183 ~ 1987047 (-) True G348143
XR_004577113.1 lncRNA upstream 42657 2242208 ~ 2242816 (-) True LOC117595926
TU412672 lncRNA upstream 106574 2306125 ~ 2308604 (-) True G348233
TU412719 lncRNA upstream 201306 2400857 ~ 2401493 (-) True G348264
TU412721 lncRNA upstream 201482 2401033 ~ 2401493 (-) False G348264
TU412742 lncRNA upstream 224164 2423715 ~ 2424331 (-) True G348283
XM_026940205.2 mRNA downstream 5505 2179539 ~ 2186080 (-) True LOC113542580
XM_026940204.2 mRNA downstream 13526 2175537 ~ 2178059 (-) False LOC113542514
XM_034298933.1 mRNA downstream 13772 2169335 ~ 2177813 (-) True LOC113542514
XM_026940098.2 mRNA downstream 18644 2169335 ~ 2172941 (-) False LOC113542514
XM_026940201.2 mRNA downstream 25203 2164473 ~ 2166382 (-) False LOC113542577
XM_034299412.1 mRNA upstream 2165 2201716 ~ 2209741 (-) False ncaph
XM_034299411.1 mRNA upstream 2165 2201716 ~ 2209741 (-) True ncaph
XM_034299099.1 mRNA upstream 53430 2252981 ~ 2282993 (-) False tacr1a
XM_026939880.2 mRNA upstream 53430 2252981 ~ 2282992 (-) True tacr1a
XM_026940273.2 mRNA upstream 157720 2357271 ~ 2363155 (-) True ogfod2
TU412644 other downstream 5641 2179543 ~ 2185944 (-) False LOC113542580
TU412577 other downstream 193115 1995902 ~ 1998470 (-) True G348145
TU412500 other downstream 362940 1827898 ~ 1828645 (-) True G348096
trnak-uuu_19 other downstream 593043 1598470 ~ 1598542 (-) True trnak-uuu_19
XR_004577143.1 other downstream 661191 1528778 ~ 1530394 (-) False LOC113542373
TU412757 other upstream 438204 2637755 ~ 2664375 (-) False zmat4a
TU412979 other upstream 585126 2784677 ~ 2785896 (-) True G348491
XR_004577129.1 other upstream 615307 2814858 ~ 2964889 (-) False unc5db
XR_003404311.2 other upstream 956491 3156042 ~ 3166254 (-) False tm2d2
XR_004577114.1 other upstream 1146604 3346155 ~ 3387730 (-) False trpm3

Expression Profile