RNA id: XM_026939880.2


Basic Information

Item Value
RNA id XM_026939880.2
length 4633
RNA type mRNA
GC content 0.45
exon number 5
gene id tacr1a
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 2252981 ~ 2282993 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCTTAATATCACAGTCAACACAAGATCACTGCAAAAAAGTAAAAGCAGCCAGAGAGCGAGGCGCGCGCCCAAAGTCTCTGCACGCCTTGCACGCGCGGCGCCATGGAACCCCGCAAAACTTCTCGGCGCGCGGGGTTTGCGGTAACCGACTGCTCGAACATGGTCGATTAAAAACAGAAGCGCGGAGGATATTTACTGCTGATTATTATTTGTGAAGATGGACCCGCTGTTCACTTACACCGACTCGCCCGGGAACTGGAGCGCGGAGAATAACGGCACGGACCCGCACTACTGGAACCAGTTCACGCAGCCTGCGTGGCGCATCGCGCTCTGGGCGCTCGCCTACAGCTTCATCGTGCTGGTGGCGGTGGTGGGCAACGTGACGGTCATGTGGATCATCGTGGCGCACAAGCGGATGCGCACCGTCACCAACTACTTCCTGGTGAACCTGGCGTTCGCCGAGGCGTCCATGTCCGCCTTCAACACCGTGGTCAACTTCGTGTACGCGGCGCACAACGAGTGGTACTTCGGCTTGGGGTACTGCCGCTTCCACAACTTCTTCCCCATCGCCGCCGTGTTCGCCAGCATCTGCTCCATGACCGCCATCGCCGTGGACAGGTACATGGCCATCATCCACCCACTGAAGCAGCGGCTCTCGTCCACGCAGACCAAAGTGATCATTGGCGTGATCTGGGTGCTCGCTTTCCTGCTCGCCTTCCCGCAGTACTACTACTCTGATGTGGACCAGCTGCCCGGTCGCGTTGTCTGTTACATCGATTGGCCAGAATACACCATCATGGACTTCAAGAAAATttactatgtgtgtgtggctgtgctGATCTACTTCCTGCCCCTGTTGGTGATGGGTTGTGCTTATCTGGTGGTGGGGCTGAACCTGTGGGCCAGCGAGATTCCCGGAGACTCCTCAGGCCGCTACCAGGAGCAACTCACCGCTAAACGCAAGGTGGTGAAGATGATGATCGTGGTCGTGTGTACCTTCGCCGTCTGCTGGCTGCCGTACCACGTCTACTTTCTCCTTCATCAGTTCTTCCCTTTGCTATTCGAGAAGCCCTTCATCCAGCAGGTCTACTTGGCTATCATGTGGCTCGCCATGAGCTCCACCATGTACAACCCCATCATCTACTGCTGCCTGAATGACAGATTTCGTGCTGGCTTCAAGCAGGCCTTCCGCTGGTGCCCTTGCATTCACGCTGACTCCTACGAAGGCCTGGAGCTCAAGTCCACGCGCTACCTGCAGACACAAACAAGTGTATACAAGACGAGCCGGGCGGAGCCCACTGTGCTGGTTGTCAACAGTCCATCGCTAGAGCTGGCGTCCAATGGCTCATCATCTCGCAGCATGTCCAAGACAGTGTCAGAGACGTCCAGCTTCTACTGTGCCAATAACCTCCCCGCCTAGGAGCTCTTACAGTCAGCAGAGGAACGTGATGAAGAATGAGTCGGTgtaatggtacaaaaaaaaaaaaacaactgatgGATCCATTTACCTCTGCACAAACATCATCTATGTATAATTTTCTGTATCGTTTTCTGTATGATCATTGTGACAGACCATTTTCAGTGGTCATGGTGGGTGTAGACAGTTGAGGAACATGCCAGAGAACCAGGAGTTTTaaatgttcctttaagttttttGATGAATCTATTCACCTCCATTTTGTCAATTATGAACCACACTGATTGAGAATTATGGGCAGATCCTATGCGGaaagtgcagaaaaaaacagaagtctGTGAAGTGTTCTTACTTATAAAGTGTTGATGGATCCATTCACCTccaaaatgaaagaatgaaagatatCAGTTTTATCTGTTATGAACCACTCTGAGTGAGTATCATGTGCACATCTTATAAGGAATGTGCCAAAGAATCAGAAGTTTATGAAATGTTCCTGCTCATAAAATGTTAATGGATCCATTCACCTCCATAATGACCATTTCATCTGGTGTTATCGTAACTCAGAGGTTAAGGCTACTGCTTAGATGGAATGTTTAGTGTTCAAATCCAAGCATTGTCATGCTGCCACTGATGGGGCCATGATCAAGCCCTTGAACCACTCAATTGATTACAGTATCTgtcagatgaataaatgtaaatactatCTCTGTTTAATGTTACAGTAGGTACTATTGGTATAGATGGCAAAGGAACATGTTGAAGAACCTGAAATCCTTGATGTGTGCCCAGCTAAATGTGTTAACCAGTTGACTTTTGGAGAGCCGGACCTTTTTCCCCATACCAAAAACTGTGTGGTGCAATCATCTGCTATGACACTATAATCTCTGTAACAGACCACTTTatagaaatgttttgtgtttgtgcaagtgCCTCACAGTATCTATTATCTGGTGTAGGTAGactatatgcttttttttgttgtttctttttctattcTTCTAAAACCTGATTCTTGCCACACTTTTGTCAAAGTTCAGCTTTGAAATGACCGATCATGAGTCCCTTCAGGGACGTAACCAGAGACCTTTTTGGAATGAGAACAGCGTCTCTGAAGCTTTGCAAACGGATCTGGAGAACTGGCTACAGTGTATTACCGTTTACATTTTACTAGCATGTAATATTGCGGATTGTGTATCGTATACAATGCCTAAACACACAgcctctcctctctgtgtatatgtctgtgtgaatgtgtttcttTTGTAGCAGGGTTTGGGAAACTCTCAGTAACGTGAGCCTCGATCTCTGATCAGCTTGGTTTGAAATCCACAGTAAGTACATTTCTGTCCAAATGACTTGCAGAAATTAAGCAAATTtccaaaaacacaatatacaatcCATGACCAGCAGTCCAACTCTAAGGACCTTGGAGTAAAATGCCTTCTGGCACGGTACAGCATCACGCTGGGCAGTATGGGGGTTGAATCCATGCCAATCACTTCTTGGGTAGATGAAAAAGCCTCGAATATAGCATCTAAACTGCCTCTTGgcacagacagagaaaggaagaatATTCAGTGGCATTTATAGCTGTGCCCGGAAATCTAAATCAGTGATGACGGCCAGGGTTCCACTGCCAAAATGTAATCAGGGGTTTCTCTGGTTCAGAAATGCTAGTAGCTGTGGCCCAGTGTGTCTTTGGCTTTGCTTTAATTTTTGTGAATTTGTCACTTAAATCTGAGAAAAAATTGTAATGGGAATGGTTGtttgtctctatctgtctacctCTGTTTGTCTTTTGAATGCCGTTGCCCTCCCCCTTCCAGCCATTTGCCTGTTCTCGGCTTAAGCGGTCACACACAAAATTAACTCTGGAGTCAGGCCCTGGAGTTTTAATTTTAGCCTCCCATCAACACATGGTGCACCAATCTGACAGAAGAGGCGGAGGAGTGGAAGGGATTTGCTGGTGCTGTTGTGGGGTGGCAATGAAAGACAAAAACTTAGAGGAGGACCGCTGGGTTTGGAGGAGGGGTAGCACACCTGTTGTTTGAGATTATGGAGCGAGGTATGTGACAGTGGTATCAGTTTCCTGGGCAGGAGGAGGACATAGTGTTTGTTAAGGGATCAAACTGTTCTGGCGCACTGAATGGTGCTCAGGCAGATTTTACGAGTGATTGTGGAATTTGCGGAGGTGTGGAGAACTTGGAGAAGTTGGGCTGGAATCCTGGGGGACTTCTGCTTTGCTCCAGACAGTCTGGTCTTCCACTAAAGACTTGACTTGGGTTGGAGTTGGTGAATAGTAAGGAGGTGGTGGGTGCAGAAACTTCGTCATTAGTGGAGAGCTGGGAATAATAGGAAATTAACTAGGAAGAAGGTGGAGCTACTGGAATGGTCATTCTCCCAAATCTCAGTTATATTAATAGCCATAATATCATGAGTTCATGAGTAggttcatgacatataatcccaattaggtcgaattcagtccaaggttataacattacaaaatgtggacAAGTTCAAGGGAGGTGAATAATCATGCAATGCACTGTAAACATCTCTAGGTATGTTCATCCTTGTGTTGAGTTTTTACTgcaggatgattttttttacatttgtttacttGGCAAAGCCTTTCATAAGAAATGTATTTCTCATAAAGCTGTAAGCTTTGTGGGTCCATAAGCAGTAGCGCCTGGTCTCCAGTTGGCGTTATGGTAATGGACTTTAACAGATTTTTCCTTGTCCTAGAGTAGAGCCCACACAGTCTGTGTATCTGTAAACAACTTCTGTCATGGGATGCCAGAACAAGTTTcaccattttataatttttcataATTCTCCCCATAGCCTGTTGAGACCAAATAGACAACAGCACAACTTGAAGAACTTCTGTCCTCTCTGTTCTGTCCTCTTCTGCCCTCTAATCTTCAGAAGGGAGGgactgactgtttatagttgctataatgtaagtgataacagcaactaacttgtttcagagACTTTCCACAGCATTCAATATAACTggttataaatggttaaaaagtatgtaatataataaaacactttgggatgagCTATTATAggaatcaactttggggtggtaagagtaactctgttTATGTCCAGAACTGCATAATTTCTTACCAAATATGATGTCATAGTATTACAGTTTTAGCTAGCTTGTGTTTATTAAACCACAATAAATCTTT

Function

GO:

id name namespace
GO:0007217 tachykinin receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004995 tachykinin receptor activity molecular_function

KEGG:

id description
K04222 TACR1; tachykinin receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577113.1 lncRNA downstream 10165 2242208 ~ 2242816 (-) True LOC117595926
TU412614 lncRNA downstream 71121 2111663 ~ 2181860 (-) True G348180
TU412635 lncRNA downstream 110879 2141616 ~ 2142102 (-) True G348200
TU412579 lncRNA downstream 219117 2033557 ~ 2033864 (-) True G348147
TU412574 lncRNA downstream 265934 1986183 ~ 1987047 (-) True G348143
TU412672 lncRNA upstream 23133 2306125 ~ 2308604 (-) True G348233
TU412719 lncRNA upstream 117865 2400857 ~ 2401493 (-) True G348264
TU412721 lncRNA upstream 118041 2401033 ~ 2401493 (-) False G348264
TU412742 lncRNA upstream 140723 2423715 ~ 2424331 (-) True G348283
TU412771 lncRNA upstream 262423 2545415 ~ 2546515 (-) True G348309
XM_034299412.1 mRNA downstream 43240 2201716 ~ 2209741 (-) False ncaph
XM_034299411.1 mRNA downstream 43240 2201716 ~ 2209741 (-) True ncaph
XM_026939754.2 mRNA downstream 53430 2191585 ~ 2199551 (-) True vamp8
XM_026940205.2 mRNA downstream 66901 2179539 ~ 2186080 (-) True LOC113542580
XM_026940204.2 mRNA downstream 74922 2175537 ~ 2178059 (-) False LOC113542514
XM_026940273.2 mRNA upstream 74279 2357271 ~ 2363155 (-) True ogfod2
XM_026940243.2 mRNA upstream 152332 2435324 ~ 2458405 (-) True LOC113542614
XM_026940065.2 mRNA upstream 182580 2465572 ~ 2482183 (-) True LOC113542490
XM_026939656.2 mRNA upstream 318542 2601534 ~ 2664482 (-) True zmat4a
XM_026939548.2 mRNA upstream 418005 2700997 ~ 2712386 (-) True sfrp1a
TU412645 other downstream 21414 2179543 ~ 2231567 (-) False LOC113542580
TU412644 other downstream 67037 2179543 ~ 2185944 (-) False LOC113542580
TU412577 other downstream 254511 1995902 ~ 1998470 (-) True G348145
TU412500 other downstream 424336 1827898 ~ 1828645 (-) True G348096
trnak-uuu_19 other downstream 654439 1598470 ~ 1598542 (-) True trnak-uuu_19
TU412757 other upstream 354763 2637755 ~ 2664375 (-) False zmat4a
TU412979 other upstream 501685 2784677 ~ 2785896 (-) True G348491
XR_004577129.1 other upstream 531866 2814858 ~ 2964889 (-) False unc5db
XR_003404311.2 other upstream 873050 3156042 ~ 3166254 (-) False tm2d2
XR_004577114.1 other upstream 1063163 3346155 ~ 3387730 (-) False trpm3

Expression Profile