RNA id: XM_034299099.1


Basic Information

Item Value
RNA id XM_034299099.1
length 4439
RNA type mRNA
GC content 0.45
exon number 4
gene id tacr1a
representative False

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 2252981 ~ 2282993 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGCTTAATATCACAGTCAACACAAGATCACTGCAAAAAAGTAAAAGCAGCCAGAGAGCGAGGCGCGCGCCCAAAGTCTCTGCACGCCTTGCACGCGCGGCGCCATGGAACCCCGCAAAACTTCTCGGCGCGCGGGGTTTGCGGTAACCGACTGCTCGAACATGGTCGATTAAAAACAGAAGCGCGGAGGATATTTACTGCTGATTATTATTTGTGAAGATGGACCCGCTGTTCACTTACACCGACTCGCCCGGGAACTGGAGCGCGGAGAATAACGGCACGGACCCGCACTACTGGAACCAGTTCACGCAGCCTGCGTGGCGCATCGCGCTCTGGGCGCTCGCCTACAGCTTCATCGTGCTGGTGGCGGTGGTGGGCAACGTGACGGTCATGTGGATCATCGTGGCGCACAAGCGGATGCGCACCGTCACCAACTACTTCCTGGTGAACCTGGCGTTCGCCGAGGCGTCCATGTCCGCCTTCAACACCGTGGTCAACTTCGTGTACGCGGCGCACAACGAGTGGTACTTCGGCTTGGGGTACTGCCGCTTCCACAACTTCTTCCCCATCGCCGCCGTGTTCGCCAGCATCTGCTCCATGACCGCCATCGCCGTGGACAGttactatgtgtgtgtggctgtgctGATCTACTTCCTGCCCCTGTTGGTGATGGGTTGTGCTTATCTGGTGGTGGGGCTGAACCTGTGGGCCAGCGAGATTCCCGGAGACTCCTCAGGCCGCTACCAGGAGCAACTCACCGCTAAACGCAAGGTGGTGAAGATGATGATCGTGGTCGTGTGTACCTTCGCCGTCTGCTGGCTGCCGTACCACGTCTACTTTCTCCTTCATCAGTTCTTCCCTTTGCTATTCGAGAAGCCCTTCATCCAGCAGGTCTACTTGGCTATCATGTGGCTCGCCATGAGCTCCACCATGTACAACCCCATCATCTACTGCTGCCTGAATGACAGATTTCGTGCTGGCTTCAAGCAGGCCTTCCGCTGGTGCCCTTGCATTCACGCTGACTCCTACGAAGGCCTGGAGCTCAAGTCCACGCGCTACCTGCAGACACAAACAAGTGTATACAAGACGAGCCGGGCGGAGCCCACTGTGCTGGTTGTCAACAGTCCATCGCTAGAGCTGGCGTCCAATGGCTCATCATCTCGCAGCATGTCCAAGACAGTGTCAGAGACGTCCAGCTTCTACTGTGCCAATAACCTCCCCGCCTAGGAGCTCTTACAGTCAGCAGAGGAACGTGATGAAGAATGAGTCGGTgtaatggtacaaaaaaaaaaaaacaactgatgGATCCATTTACCTCTGCACAAACATCATCTATGTATAATTTTCTGTATCGTTTTCTGTATGATCATTGTGACAGACCATTTTCAGTGGTCATGGTGGGTGTAGACAGTTGAGGAACATGCCAGAGAACCAGGAGTTTTaaatgttcctttaagttttttGATGAATCTATTCACCTCCATTTTGTCAATTATGAACCACACTGATTGAGAATTATGGGCAGATCCTATGCGGaaagtgcagaaaaaaacagaagtctGTGAAGTGTTCTTACTTATAAAGTGTTGATGGATCCATTCACCTccaaaatgaaagaatgaaagatatCAGTTTTATCTGTTATGAACCACTCTGAGTGAGTATCATGTGCACATCTTATAAGGAATGTGCCAAAGAATCAGAAGTTTATGAAATGTTCCTGCTCATAAAATGTTAATGGATCCATTCACCTCCATAATGACCATTTCATCTGGTGTTATCGTAACTCAGAGGTTAAGGCTACTGCTTAGATGGAATGTTTAGTGTTCAAATCCAAGCATTGTCATGCTGCCACTGATGGGGCCATGATCAAGCCCTTGAACCACTCAATTGATTACAGTATCTgtcagatgaataaatgtaaatactatCTCTGTTTAATGTTACAGTAGGTACTATTGGTATAGATGGCAAAGGAACATGTTGAAGAACCTGAAATCCTTGATGTGTGCCCAGCTAAATGTGTTAACCAGTTGACTTTTGGAGAGCCGGACCTTTTTCCCCATACCAAAAACTGTGTGGTGCAATCATCTGCTATGACACTATAATCTCTGTAACAGACCACTTTatagaaatgttttgtgtttgtgcaagtgCCTCACAGTATCTATTATCTGGTGTAGGTAGactatatgcttttttttgttgtttctttttctattcTTCTAAAACCTGATTCTTGCCACACTTTTGTCAAAGTTCAGCTTTGAAATGACCGATCATGAGTCCCTTCAGGGACGTAACCAGAGACCTTTTTGGAATGAGAACAGCGTCTCTGAAGCTTTGCAAACGGATCTGGAGAACTGGCTACAGTGTATTACCGTTTACATTTTACTAGCATGTAATATTGCGGATTGTGTATCGTATACAATGCCTAAACACACAgcctctcctctctgtgtatatgtctgtgtgaatgtgtttcttTTGTAGCAGGGTTTGGGAAACTCTCAGTAACGTGAGCCTCGATCTCTGATCAGCTTGGTTTGAAATCCACAGTAAGTACATTTCTGTCCAAATGACTTGCAGAAATTAAGCAAATTtccaaaaacacaatatacaatcCATGACCAGCAGTCCAACTCTAAGGACCTTGGAGTAAAATGCCTTCTGGCACGGTACAGCATCACGCTGGGCAGTATGGGGGTTGAATCCATGCCAATCACTTCTTGGGTAGATGAAAAAGCCTCGAATATAGCATCTAAACTGCCTCTTGgcacagacagagaaaggaagaatATTCAGTGGCATTTATAGCTGTGCCCGGAAATCTAAATCAGTGATGACGGCCAGGGTTCCACTGCCAAAATGTAATCAGGGGTTTCTCTGGTTCAGAAATGCTAGTAGCTGTGGCCCAGTGTGTCTTTGGCTTTGCTTTAATTTTTGTGAATTTGTCACTTAAATCTGAGAAAAAATTGTAATGGGAATGGTTGtttgtctctatctgtctacctCTGTTTGTCTTTTGAATGCCGTTGCCCTCCCCCTTCCAGCCATTTGCCTGTTCTCGGCTTAAGCGGTCACACACAAAATTAACTCTGGAGTCAGGCCCTGGAGTTTTAATTTTAGCCTCCCATCAACACATGGTGCACCAATCTGACAGAAGAGGCGGAGGAGTGGAAGGGATTTGCTGGTGCTGTTGTGGGGTGGCAATGAAAGACAAAAACTTAGAGGAGGACCGCTGGGTTTGGAGGAGGGGTAGCACACCTGTTGTTTGAGATTATGGAGCGAGGTATGTGACAGTGGTATCAGTTTCCTGGGCAGGAGGAGGACATAGTGTTTGTTAAGGGATCAAACTGTTCTGGCGCACTGAATGGTGCTCAGGCAGATTTTACGAGTGATTGTGGAATTTGCGGAGGTGTGGAGAACTTGGAGAAGTTGGGCTGGAATCCTGGGGGACTTCTGCTTTGCTCCAGACAGTCTGGTCTTCCACTAAAGACTTGACTTGGGTTGGAGTTGGTGAATAGTAAGGAGGTGGTGGGTGCAGAAACTTCGTCATTAGTGGAGAGCTGGGAATAATAGGAAATTAACTAGGAAGAAGGTGGAGCTACTGGAATGGTCATTCTCCCAAATCTCAGTTATATTAATAGCCATAATATCATGAGTTCATGAGTAggttcatgacatataatcccaattaggtcgaattcagtccaaggttataacattacaaaatgtggacAAGTTCAAGGGAGGTGAATAATCATGCAATGCACTGTAAACATCTCTAGGTATGTTCATCCTTGTGTTGAGTTTTTACTgcaggatgattttttttacatttgtttacttGGCAAAGCCTTTCATAAGAAATGTATTTCTCATAAAGCTGTAAGCTTTGTGGGTCCATAAGCAGTAGCGCCTGGTCTCCAGTTGGCGTTATGGTAATGGACTTTAACAGATTTTTCCTTGTCCTAGAGTAGAGCCCACACAGTCTGTGTATCTGTAAACAACTTCTGTCATGGGATGCCAGAACAAGTTTcaccattttataatttttcataATTCTCCCCATAGCCTGTTGAGACCAAATAGACAACAGCACAACTTGAAGAACTTCTGTCCTCTCTGTTCTGTCCTCTTCTGCCCTCTAATCTTCAGAAGGGAGGgactgactgtttatagttgctataatgtaagtgataacagcaactaacttgtttcagagACTTTCCACAGCATTCAATATAACTggttataaatggttaaaaagtatgtaatataataaaacactttgggatgagCTATTATAggaatcaactttggggtggtaagagtaactctgttTATGTCCAGAACTGCATAATTTCTTACCAAATATGATGTCATAGTATTACAGTTTTAGCTAGCTTGTGTTTATTAAACCACAATAAATCTTT

Function

GO:

id name namespace
GO:0007217 tachykinin receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0004995 tachykinin receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577113.1 lncRNA downstream 10165 2242208 ~ 2242816 (-) True LOC117595926
TU412614 lncRNA downstream 71121 2111663 ~ 2181860 (-) True G348180
TU412635 lncRNA downstream 110879 2141616 ~ 2142102 (-) True G348200
TU412579 lncRNA downstream 219117 2033557 ~ 2033864 (-) True G348147
TU412516 lncRNA downstream 231846 1982054 ~ 2021135 (-) False arvcfb
TU412672 lncRNA upstream 23132 2306125 ~ 2308604 (-) True G348233
TU412719 lncRNA upstream 117864 2400857 ~ 2401493 (-) True G348264
TU412721 lncRNA upstream 118040 2401033 ~ 2401493 (-) False G348264
TU412742 lncRNA upstream 140722 2423715 ~ 2424331 (-) True G348283
TU412771 lncRNA upstream 262422 2545415 ~ 2546515 (-) True G348309
XM_034299412.1 mRNA downstream 43240 2201716 ~ 2209741 (-) False ncaph
XM_034299411.1 mRNA downstream 43240 2201716 ~ 2209741 (-) True ncaph
XM_026939754.2 mRNA downstream 53430 2191585 ~ 2199551 (-) True vamp8
XM_026940205.2 mRNA downstream 66901 2179539 ~ 2186080 (-) True LOC113542580
XM_026940204.2 mRNA downstream 74922 2175537 ~ 2178059 (-) False LOC113542514
XM_026940273.2 mRNA upstream 74278 2357271 ~ 2363155 (-) True ogfod2
XM_026940243.2 mRNA upstream 152331 2435324 ~ 2458405 (-) True LOC113542614
XM_026940065.2 mRNA upstream 182579 2465572 ~ 2482183 (-) True LOC113542490
XM_026939656.2 mRNA upstream 318541 2601534 ~ 2664482 (-) True zmat4a
XM_026939548.2 mRNA upstream 418004 2700997 ~ 2712386 (-) True sfrp1a
TU412645 other downstream 21414 2179543 ~ 2231567 (-) False LOC113542580
TU412644 other downstream 67037 2179543 ~ 2185944 (-) False LOC113542580
TU412577 other downstream 254511 1995902 ~ 1998470 (-) True G348145
TU412500 other downstream 424336 1827898 ~ 1828645 (-) True G348096
trnak-uuu_19 other downstream 654439 1598470 ~ 1598542 (-) True trnak-uuu_19
TU412757 other upstream 354762 2637755 ~ 2664375 (-) False zmat4a
TU412979 other upstream 501684 2784677 ~ 2785896 (-) True G348491
XR_004577129.1 other upstream 531865 2814858 ~ 2964889 (-) False unc5db
XR_003404311.2 other upstream 873049 3156042 ~ 3166254 (-) False tm2d2
XR_004577114.1 other upstream 1063162 3346155 ~ 3387730 (-) False trpm3

Expression Profile