RNA id: XM_026939916.2


Basic Information

Item Value
RNA id XM_026939916.2
length 2317
RNA type mRNA
GC content 0.40
exon number 8
gene id kmt5ab
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 5084057 ~ 5101494 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCAGATTCTCAAAGAGGCCACGCCTGCCTGATGACACATTTCGATTACGCTATTCTGAAACCCCTGGAAAAAAGTGAATCCCTTTTTCAGTATAAGAAAATACGGGGTACGCAACCGTACGGTTGACGCTAAAGTTTCGCACGTGACGTTTTTGTGCATGCGCGGTGGATTGAATCGTGCCGTAAACCGTTAACGTATGCGTGGTACAGGTCGGGCGGCATCATGGCTACCTGATCCGCGTCCCCTGTCCAGTATGTACCACGCATGCGCCGGGCACAGGCCCTTGCAGATGAGAAGACTACTTCAACTatagttgaagattagaaattTCAAAATGAGGGtcgttttctttggcttttactggttggagtttgggaattacaagttgcgcCCTTGAGTCGAACGCATCGCGAATGTAGCGTTTTACTGGAGAGTGAGGGTGGGATTTGTAGTTTCAGGTTACGAAAGCGCTAATTATTCTGAGCCAATCATAAGCCCGGTCCTCTTGCCGCTGACCAATGAGACATGtagtagatttttaaaaaaaatttccccaCTGCGAAAAACAGTGCAGTTTACGAGGATTCAGTGCTTGTCAGGTGAATACCACCAGGATAGTTAAATACTTTTATAGAGAACCCGTGTCGAATTTGGGAAATAACTAACTGTGGTCGGACCAGCTGAAATGGCAAAAGgcAAGAAGAAAACACGGACCATCGAGATAAGACTCGAAGAACCACACAAGAACAAGGTCGAAAAAGAAactaaagaaaacaaacaggatTTGAAAACGACTCGCCAAGAGCAGTTAACAATATATTCTGATATTCTTCGTTCTCAACCTCGCAACAGCCCCCTTTTTCCTATTCAAGAGGAAAGTTCATCCTGCAGCACCCACAATGCAAGCAGACACCAAGTAAGACTTGCAGTCAACTTGCATTCAcctaaagaagaaaataaagggACACAGCTCATGTCTTTTGGACCTAAAGAGAAGCAACCCCATGAAGACAAAAGCTCTGCTACAGTCCTTCCAAACAAATCTGAACTTGAGACTCGTGCTAAGGCCAAAGTCCCACACAAAAAagCAGAAGGCAAAACCTCTCAACAAACCCGAAAGGTCACTGATTATTATCCAATTAGAAGGAGCGCTAGAAAAAGTAAAGCTGAACTGAAGAGTGAAGAGCAAAGTCATATTGATGACCTAATCTTAAACAATGTGGAAGATGGACTCAAGGTTAAGTATATTGAAGGAAAAGGACGGGGGGTTTTTGCAGACAGAGAATTTAATAAAGGTCAATTTATTGTGGAGTATCATGGGGATTTGCTTCCAATTGCTGATGCCAAGAGAAAAGAAGCACAGTATGCTCAAGACCCTGCAAAAGGCTGCTACATGTACTACTTCCGCTACAAGAACCACACTTACTGTGTGGATGCCACTAAAGAAACCAACCGTCTAGGGAGGCTGATCAACCACAGCAAAAATGGAAACTGCCAGACGAGACTGCATAACATAAATGGTGTACCTCATCTCATTTTGGTGGCATCCAGAGACATTAAAGCAGAAGAAGAACTACTTTATGACTATGGCGACCGCAGTAAAGAAGCCATTGCTGCTCATCCTTGGCTTAAGTACTGACCTCGTATTTCATCATTGTTTTCCCTACTTCAGATATGAGGAATCTGGGAGAAAGAAAGCTTTAGTCATATAAATTGAGGCCTTTGTTGCCATGTTAAATTCTGGAATCACTATTCCCAATTGTGCCTTGACCTATTCTTCTATTTCTGCTTAATCAGGCCAGTGAGTGGTTTCTGAGCTGTAAGACTTGTGAGATTCAGTATGGTTTACCAGGCTAAAGTAAAGATACTTAAATTCTTATGCGAGAATTTAGCGCAGTTGGTCTGACAGGGTTATTATTGTGACattttaaagtctttaaaaatagactattcagattttttttatttatttatttttttttatttatttatttattttttttaaaccatttcagTGCAAGTAAGATTTTCATTCAAGATTTTCATAGTATATTTTATCATACTATATTATCATACTAAGTAACAGTATCCTTATGTTTTGGTTCTACACAGTTTTGTGAGACATTTATTCCGTGTATGAATGTACGGAGCAATGTTTTAGctcaggatgtttttttttttttttttttttttctggaatgtGTTGTGGTACAGCTGAATGAATAAAGAACAATTTATTCCTTAGATGTTGTATTGTTCCACAAAAGCACATAATCCAGCTGACCACTCGAAGGAATAAAACCTGGTTGAAAGTca

Function

GO: NA

KEGG:

id description
K11428 SETD8; [histone H4]-lysine20 N-methyltransferase SETD8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU414559 lncRNA downstream 17896 5065777 ~ 5066161 (-) True G349823
XR_004577095.1 lncRNA downstream 23669 5055342 ~ 5060388 (-) True LOC117595908
TU414547 lncRNA downstream 65382 5018106 ~ 5018675 (-) True G349812
TU414540 lncRNA downstream 77408 5006276 ~ 5006649 (-) True G349805
TU414350 lncRNA downstream 298033 4777030 ~ 4786024 (-) True G349642
TU414566 lncRNA upstream 1234 5102728 ~ 5102953 (-) True G349830
TU414568 lncRNA upstream 2536 5104030 ~ 5104290 (-) True G349832
TU414569 lncRNA upstream 7561 5109055 ~ 5110303 (-) True G349833
TU414546 lncRNA upstream 14322 5115816 ~ 5126817 (-) True G349811
TU414579 lncRNA upstream 37450 5138944 ~ 5139217 (-) True G349843
XM_034299132.1 mRNA downstream 67642 5007202 ~ 5016415 (-) True mob1a
XM_026940023.2 mRNA downstream 70748 5007202 ~ 5013309 (-) False mob1a
XM_026939573.2 mRNA downstream 79682 5000023 ~ 5004375 (-) True dguok
XM_026939980.2 mRNA downstream 109959 4947952 ~ 4974098 (-) True ebf2
XM_034299369.1 mRNA upstream 130589 5232083 ~ 5233817 (-) True LOC117595987
XM_034298907.1 mRNA upstream 147154 5248648 ~ 5327552 (-) False hip1rb
XM_026939549.2 mRNA upstream 147154 5248648 ~ 5327552 (-) True hip1rb
XM_026939551.2 mRNA upstream 147154 5248648 ~ 5304720 (-) False hip1rb
XM_026939767.2 mRNA upstream 264219 5365713 ~ 5523281 (-) False LOC113542328
TU414275 other downstream 544226 4539283 ~ 4539831 (-) True G349584
XR_004577114.1 other downstream 1696327 3346155 ~ 3387730 (-) False trpm3
XR_003404311.2 other downstream 1917803 3156042 ~ 3166254 (-) False tm2d2
XR_004577129.1 other downstream 2119168 2814858 ~ 2964889 (-) False unc5db
TU412979 other downstream 2298161 2784677 ~ 2785896 (-) True G348491
TU414706 other upstream 220019 5321513 ~ 5364282 (-) True G349951
TU414705 other upstream 260788 5362282 ~ 5367010 (-) False LOC113542328
XR_004577106.1 other upstream 475126 5576620 ~ 5578981 (-) False LOC117595919
XR_004577154.1 other upstream 955487 6056981 ~ 6120959 (-) True pappab
XR_004577155.1 other upstream 955741 6057235 ~ 6120959 (-) False pappab

Expression Profile