RNA id: XM_026939931.2


Basic Information

Item Value
RNA id XM_026939931.2
length 2534
RNA type mRNA
GC content 0.51
exon number 18
gene id rad17
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1901159 ~ 1907573 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACTTGCAGTGAAAAAAGTACCTGCGGAGAGGCGGACCGTTGGAACTTTAAAGGGATACAGAGCTCTTAGCTATATTTCAGCTAATGTCCTACATGAGCGTAAAAGCATTAGGGCTTTTATATAGCGTCAGAAATGACTGAGtgtcaGACTGATTAATCCGGCTGTGTGAATGGGAAGAGCTGATAATGTCAAAACTTTCTCTAGGAGGAAAGACGTCCTCTGGTAAATTAAGCAGCTGGGTACAACCatcctttgttgattttttcGGCGGCTCGGGGTTGAACACCCTCCCCTCGACAAAGGGACTTTCCGGAGAAAGCAAGTCCAAAGCACGATCCTCGAGTGCGATGTCGGCTGGAAAGAAGCCGaagaagagaaagggagagCCTCAGATTTCTAAACTCGAGCCTGCTGTCTTCTCGAGCAGACGAGGATCAGAGGAGAACCAGGATGAACCCTGGGTGGATGTTCATGCACCTCAGACACAAgCCGAGCTGGCAGTCCACAAGAAGAAAGTTGAGGAAGTCGAGAGTTGGCTGAGGGTTCATTTGGACTTAAAGAGCACTAATAAGGCGGCGCTTGTTCTGTTAATGACCGGCCCGTCCGGCTGCGGAAAGACAGCCACCGTTCACGTCCTGGCTAAAGATGCGTGCTGTCACATCCAGGAGTGGACGAACCCGACCACCGCGGAGTACAGGACGGACGACTCCTTCAGGGAGAGCTTCGATCCAGCCTCCAGGTTTAACAGTTtccacagcagctcacagacggCAGCTTTCCAGGAGTTTCTGCTCCGAGCGAACAAATACAACCGGCTGCAGATGAGCGGAGACGACGGGGCTCAGGAAAGGAAGATCATCCTCGTAGAGGATTTTCCAAATCAGTTCTACAGACAGCCAGGATGCTTGCATGACATCCTCAGgCGTTTCGTGCGGACAGGGAGGTTCCCGCTGGTCTTTATCGTGTCTGACAGCCTGAGCGGAGACACCAGTTCCAGACTCCTCTTTCCTAAAGACATACAGGAGGAGCTGAGCATCCACAACGTCAGTTTTAACCCCGTAGCCCCTACCAGCATGATGAAGGTGCTGAATAGGATTGCGACTGTCGAAGCGAGCAAGAGTGCTGGGAGGATCTCCGTGCCTGATAAGGCAGCACTGGAGCAGCTGTGCTCCGGAAGTTCAGGTGACATTCGGAGTGCCATCAACAGCCTGCAGTTCTCCTCTTTCACTGACTTCTCTCTGGAAAAAAGCCTCTGGGCTTCTAAGAAGGGAAAATCATCCACATCTGCAGCAAAACCCTCAGCGAGACCCAAAGGCAGGGGTCGGTCCACTAAATCCACCGAGGTGCTGGAGGAGAGTCCTGCTATTGGAGGAAAAGACGCATCCCTCTTCCTCTTCAGAGCGCTCGGAAAAATCCTCTACTGCAAGCGAGAAAGCTATGAAGCTGGTGATATTCCTAAGCTACCAGCGCATCTTTCAGAGCATCAGAGGGATAAACTGCTGGTTGACCCcgagCTTGTTATTGAGCGCTCTCACATGTCAGGCGAGTTCTTTAACCTCTACCTGCACCAGAACTACATGGACTTTTTCTCAGACGTGGAGGACGTGGCGCGGGCCAGCGAGTACCTCTCAGACGCTGACTTCCTGACAGCTGAATGGACTTCCAGGTCCACCATGTTGGAGTATGGATCTTCAGTAGCCACTAGAGGGCTCATCCACTCTAACAGCGCCCGCGCTCAGGCTGCTCACCAGTCGTCAGTCGGCTTTAAGCCACTTCACAAGCCCCACTGGCTGCATATTAACAAGACGTACCGAGAGAATTATCTGACGGCTCAGTCGCTCTTCATCAGCTTCTGTCTGACACCTGTAAGCCTTGTGACTGAGCTAGTGCCTTACCTGGCCAAGCTCAGCAACCCTATGAGGAatcaagCTCAGATAACCTTCATCCAAGATATCGGCCATCTGTCGCTCAGGAGATTTCCTGGCAGATTAAAACTTGAAGCACTTGGTGATAAAGACCCTGGCCTGCTGGACCTGGACAGTGATCATGAAGAGACAGGAACCCAGAGCACTGAGCCTGGCACTCAGACCACTCTGCCAGGAGATACCACTGCTGTGCCCACCCTCCCAAACAGCCAGGAGCCAGGGGGAGACCTCCCCGCTAGCCAGCCTCAGCCAACCACTGCCGAGGCCTTGCTGGACGAGGAGGACCTTCTAATTGAGGAGTATGACAGTGACTGACAAATCACACGCTCCTGTTTCCTATATATCCTATGCCATTGTTGCCTTGAGGAGACCCGGTTCTTACGTTAATGTTTCTGCATCACTGTGTTTTTGCATATGGTTTTATAATGTGAATAATGAGCAGGTTTAATATTTATTCGGTTCAACACAAACAGTAGACTGTCtttgtgtcgtgtgtgtgtacatgttggTGTTATGGTGTTCCTATCGGACTCGGTCATAGGGACCTACAGAATGTGAGTGTTTATAtatgatctttaaaaaaaaaaaaaaaaagtgtttggaCATTT

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K06662 HRAD17, RAD24; cell cycle checkpoint protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412497 lncRNA downstream 25403 1794830 ~ 1875756 (-) True G348094
TU412483 lncRNA downstream 30013 1790117 ~ 1871146 (-) True G348092
TU412476 lncRNA downstream 35085 1785025 ~ 1866074 (-) True G348088
TU412259 lncRNA downstream 134230 1763211 ~ 1766929 (-) True G347905
TU412254 lncRNA downstream 158859 1734913 ~ 1742300 (-) True G347900
TU412516 lncRNA upstream 74481 1982054 ~ 2021135 (-) False arvcfb
TU412574 lncRNA upstream 78610 1986183 ~ 1987047 (-) True G348143
TU412579 lncRNA upstream 125984 2033557 ~ 2033864 (-) True G348147
TU412614 lncRNA upstream 204090 2111663 ~ 2181860 (-) True G348180
TU412635 lncRNA upstream 234043 2141616 ~ 2142102 (-) True G348200
XM_026939612.2 mRNA downstream 1095 1892269 ~ 1900064 (-) True ccdc125
XM_034299260.1 mRNA downstream 2746 1892268 ~ 1898413 (-) False ccdc125
XM_034299290.1 mRNA downstream 9033 1886652 ~ 1892126 (-) True fam151b
XM_026939783.2 mRNA downstream 9033 1887072 ~ 1892126 (-) False fam151b
XM_026939781.2 mRNA downstream 9034 1886652 ~ 1892125 (-) False fam151b
XM_034299249.1 mRNA upstream 44056 1951629 ~ 1968139 (-) True erap1b
XM_034299248.1 mRNA upstream 44056 1951629 ~ 1968115 (-) False erap1b
XM_026940309.2 mRNA upstream 75835 1983408 ~ 2127645 (-) False arvcfb
XM_026940310.2 mRNA upstream 75835 1983408 ~ 2127645 (-) False arvcfb
XM_026940307.2 mRNA upstream 75835 1983408 ~ 2061902 (-) False arvcfb
TU412500 other downstream 72514 1827898 ~ 1828645 (-) True G348096
trnak-uuu_19 other downstream 302617 1598470 ~ 1598542 (-) True trnak-uuu_19
XR_003404300.2 other downstream 370765 1507615 ~ 1530394 (-) False LOC113542373
TU412577 other upstream 88329 1995902 ~ 1998470 (-) True G348145
TU412644 other upstream 271970 2179543 ~ 2185944 (-) False LOC113542580
TU412645 other upstream 271970 2179543 ~ 2231567 (-) False LOC113542580
TU412757 other upstream 730182 2637755 ~ 2664375 (-) False zmat4a
TU412979 other upstream 877104 2784677 ~ 2785896 (-) True G348491

Expression Profile