RNA id: XM_026940023.2


Basic Information

Item Value
RNA id XM_026940023.2
length 1596
RNA type mRNA
GC content 0.37
exon number 6
gene id mob1a
representative False

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 5007202 ~ 5016415 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTCGTCTTTGctgtttcctttttctctgCGGCGGTgcaaacacttcctgtttcctgttcacTTTGTTTAAAGTTTTGAAACTTCGGCAAGTACGTTATTTACATCGGTTTGTTTCCTCAACCCAGAATCTGGTTAAGACTTTTTGCTCTGCGTAACTTGGACTTAACGCTGTTTGGAAGATTCGTTGGAAGCAAAGTTAACGGAAATGAGCTTCTTATTTGGCAGTCGGTCTTCAAAGACATTCAAACCAAAGAAAAACATTCCAGAGGGTTCTCACCAGTATGAGCTCTTGAAACATGCTGAAGCAACATTGGGAAGTGGTAACCTTCGGGCTGCTGTGATGTTACCAGAAGGAGAAGACCTTAATGAATGGATCGCTGTTAATACTGTCGACTTCTTCAACCAGATCAACATGCTGTATGGCACCATCACTGAATTCTGCACTGAAACCAACTGCCCTGTCATGTCTGCAGGGCCCAAATATGAATATCACTGGGCTGATGGTACCAACATAAAGAAACCAATCAAATGCTCGGCTCCAAAATACATTGACTACTTGATGACTTGGGTCCAAGATCAGCTGGATGATGAAACCCTATTTCCTTCCAAAATTGgTGTGCCTTTCCCAAAAAACTTCATGTCAGTGGCTAAAACAATTCTGAAGCGTTTGTTCAGAGTCTATGCTCACATTTACCACCAGCACTTTGACTCTGTCATGCAGCTACAGGAGGAGGCCCATCTCAACACTTCTTTCAAGCATTTCATCTTCTTTGTGCAGGAATTTAACCTGATTGACCGCAGAGAGCTGGTTCCTCTGCAGGAACTTATCGAGAAACTAGGCACCAAGGACCgataaaaaacttacaaataTATGTATCACCGAAATATTTCTCCTTTTGTTCAGAGAATTTTAAAGCCACAGTCAGTACATTTAGgaataaaagtatattttaacaATGTACTGACTGTAGATTAACAATGTTTGTATGTACTTGTCTTTTTATTTGGGCTTCATGAACTATACAAATGTTGGACAAAGTAGATGGGAGATAGAAACTGCAGGcagatttttatattaaacattttattgttttatattcaaGCATTTGATCTTTTTAATATAACAGGGAAAAACCAAATACAACACCTTTTTCAGTTGAAGGTATTGAAGGTGAATGGAGCAAAAGTTTATAGGTTTCTGTGAGTAACACGTGTACATTCTTGCTAGGGTCTAACATTTCTTTCATGCGGAAAGTTATTATGGACATACTGTAGGTCAGTATTTTTGCTTTGAAATTTAGACTGTAACAGTAATGTTACTGTCTACAAGCTGCTGATTATACTCATTTACAAAATGCTGATTTTTTCCTTGCATTGAATATCAccattatttcttttctttgataGCCCGGAGGCATTGAAAAGTATAGTTGGCTccaatgaaaaatgaatgaactgtTGATCATctaaatgactgtttatttttctttttctttttttttcaaatttgtatCATTAAGCATGGTGTTGTGCAGGACTTTTCAGGACTATGAATAACTTTTTAAGATGAAGATTAAAGCTATATTTGCATCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU414540 lncRNA downstream 553 5006276 ~ 5006649 (-) True G349805
TU414350 lncRNA downstream 221178 4777030 ~ 4786024 (-) True G349642
TU414369 lncRNA downstream 303036 4703393 ~ 4704166 (-) True G349655
TU414221 lncRNA downstream 495190 4464174 ~ 4512012 (-) True G349547
TU414019 lncRNA downstream 803098 3882016 ~ 4204104 (-) False carnmt1
TU414547 lncRNA upstream 4797 5018106 ~ 5018675 (-) True G349812
XR_004577095.1 lncRNA upstream 42033 5055342 ~ 5060388 (-) True LOC117595908
TU414559 lncRNA upstream 52468 5065777 ~ 5066161 (-) True G349823
TU414566 lncRNA upstream 89419 5102728 ~ 5102953 (-) True G349830
TU414568 lncRNA upstream 90721 5104030 ~ 5104290 (-) True G349832
XM_026939573.2 mRNA downstream 2827 5000023 ~ 5004375 (-) True dguok
XM_026939980.2 mRNA downstream 33104 4947952 ~ 4974098 (-) True ebf2
XM_026939916.2 mRNA upstream 70748 5084057 ~ 5101494 (-) True kmt5ab
XM_034299369.1 mRNA upstream 218774 5232083 ~ 5233817 (-) True LOC117595987
XM_034298907.1 mRNA upstream 235339 5248648 ~ 5327552 (-) False hip1rb
XM_026939549.2 mRNA upstream 235339 5248648 ~ 5327552 (-) True hip1rb
XM_026939551.2 mRNA upstream 235339 5248648 ~ 5304720 (-) False hip1rb
TU414275 other downstream 467371 4539283 ~ 4539831 (-) True G349584
XR_004577114.1 other downstream 1619472 3346155 ~ 3387730 (-) False trpm3
XR_003404311.2 other downstream 1840948 3156042 ~ 3166254 (-) False tm2d2
XR_004577129.1 other downstream 2042313 2814858 ~ 2964889 (-) False unc5db
TU412979 other downstream 2221306 2784677 ~ 2785896 (-) True G348491
TU414706 other upstream 308204 5321513 ~ 5364282 (-) True G349951
TU414705 other upstream 348973 5362282 ~ 5367010 (-) False LOC113542328
XR_004577106.1 other upstream 563311 5576620 ~ 5578981 (-) False LOC117595919
XR_004577154.1 other upstream 1043672 6056981 ~ 6120959 (-) True pappab
XR_004577155.1 other upstream 1043926 6057235 ~ 6120959 (-) False pappab

Expression Profile