RNA id: XM_026940048.2


Basic Information

Item Value
RNA id XM_026940048.2
length 1860
RNA type mRNA
GC content 0.42
exon number 4
gene id tm2d2
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 3156042 ~ 3166254 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACTCAGGAGGCGGGACTTGTCGAAATACGGGTAGCGCTGCTGGGGCTTGCGCGGTTAGCATGAGAGCTAGCTTGCTGGAATGACGGATTTgtaaagagagacacagaaactTCGCCATGTCTCACATTTCTGTGAATTATGTGTTGTTAGGCGGACAGTTTTTCTTGCTCGTCTCGGTGCTGCTTTTGCAATGCCTGGAAGGGATTCACTCTGAAAACTCCACCACACCCGGAAGCAGagagacaacaacaacaacaacaacaaccacaacaacgacaacaacaacaacaactacaacaacaacaacaacagctgcATCTACTACAGTCACCGCTCTGTTCACACAGCCAGCTGAAGAAAATGTCACATACAATAACATCACGACAGCAGAGCCGTTAAATCACACGGAGCAGTATGAATACAGCCCTCCATCTCCAGTGGTCCTCTGTCGGTACCTTCCTGAGGAGTTTATATACTGCAGGGATCCTGTCGATCACGATGGAAACCTCACAGCCTTCCAGGAGCTGGGACACGGCTGCGTCAAGattGGAAATCAAGGTCAGGTGTACAAAGATGTGAATCACACACAAGTGCTGTGCACAGCGTTGGACGGCATCGAGTGTGCCGGGCCTCGAGAATTCCTCCGAGGGAACGAACCGTGCATCAAATACACGGGTCACTACTTCATCACCACGCTCCTGTACTCGTTCTTCCTGGGCTGCTTCGGCGTGGACCGCTTCTGTCTGGGCCACACAGGCACCGCCGTCGGAAAGCTCCTCACCCTCGGAGGCCTGGGAATCTGGTGGTTTGTGGATCTCATCCTCCTCATAACCGGAGGACTGACGCCCAGCGACGGCAGCAACTGGTGCACGTTCTACTGATCGCAGACGTTTCTACCCGCAAGCGCGCATCTGTTGATCCCTTTATCATGGTACTGTATTAAGAACGACATATAGGCACGTGTCGTAAATGCAGCCTAGTTTGTGGcgatattataaaatatatatatataataattattattataataattattataaatatataatgttggAATTACTGGCTGCAGTTCTAGAGGAATATGACagattcttttaaaatattcattaaatgtgCTGAATGAAATGTGTAAGATACTGCTTTgttttgtacagtgtaaagATTTGAAGTAGTTTTTTTGTTGTAGATAAAATGTCATTCACTGTGTACATGTTTGAATAAAGGCACAAACGTTAGTAcattacataagtattcacccctttgaACTTTCCCACATTTCCCACATACTTATATAAGTAAATGGGATTATATGTAATGAATcgaaagggggtgaatacttatgcaaggcaccgaaaaaaaaaaaaaaagttctgttcCGCATTTTGACCTTTACAACAAATTCATACATGTTCAATCAAGACAGTGCAGCTGTTTGGTCCATTTCAGTGCTTGGCCTTTGTAAAGAAATCATCTactcttctttttattttccttccacGTACAATCTGCCGTTGTCACACTTCATGTGAATTGTTTGATAAAATGCCAAGATTTGCATAGTAAAGCTTACAGCGATGAAAATGTCAGTCAAATCCGCTTTTATCATATTGCAGATCAAGTACCAACAAAGCACTGGAGATGCAGCGCACGAAAAACATTCGCTCATCCTTCCTGAGAAATACTCAAAAcatgcaatgaaaaaaaaaaatcacttcctTTCAACAAAAAccctttgattttatttcaatataatataatgttattttaatgggGATTTTTTGAAAGCTTGGCACTCCACGTCCCTGCTTTCTAGCATGTCAAGAGCCCAGTAATTCAATAAATTATAACTCTTTTGTTTA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU413141 lncRNA downstream 9694 3150001 ~ 3150416 (-) True G348640
TU412963 lncRNA downstream 328431 2779837 ~ 2831679 (-) True LOC113542231
TU412967 lncRNA downstream 358906 2773722 ~ 2801204 (-) False LOC113542231
TU412758 lncRNA downstream 565787 2549097 ~ 2594323 (-) True G348296
TU412773 lncRNA downstream 611100 2548123 ~ 2549010 (-) True G348311
TU413168 lncRNA upstream 32429 3198682 ~ 3198896 (-) True G348661
TU413170 lncRNA upstream 37838 3204091 ~ 3205284 (-) True G348663
TU413171 lncRNA upstream 37838 3204091 ~ 3205284 (-) False G348663
TU413169 lncRNA upstream 39252 3205505 ~ 3207834 (-) True G348662
TU413177 lncRNA upstream 57047 3223300 ~ 3223499 (-) True G348669
XM_034299177.1 mRNA downstream 195221 2811544 ~ 2964889 (-) False unc5db
XM_026940090.2 mRNA downstream 195221 2811544 ~ 2964889 (-) True unc5db
XM_026939600.2 mRNA downstream 358556 2793455 ~ 2801554 (-) False hdr
XM_026939599.2 mRNA downstream 358556 2793455 ~ 2801554 (-) True hdr
XM_026939601.2 mRNA downstream 368536 2786249 ~ 2791574 (-) False LOC113542230
XM_034299142.1 mRNA upstream 2025 3168278 ~ 3200058 (-) False tbx3b
XM_034299141.1 mRNA upstream 2025 3168278 ~ 3200058 (-) False tbx3b
XM_026940061.2 mRNA upstream 2025 3168278 ~ 3200058 (-) True tbx3b
XM_034299140.1 mRNA upstream 2025 3168278 ~ 3181920 (-) False tbx3b
XM_034299143.1 mRNA upstream 2025 3168278 ~ 3178189 (-) False tbx3b
XR_004577129.1 other downstream 195221 2814858 ~ 2964889 (-) False unc5db
TU412979 other downstream 374214 2784677 ~ 2785896 (-) True G348491
TU412757 other downstream 495735 2637755 ~ 2664375 (-) False zmat4a
TU412645 other downstream 928543 2179543 ~ 2231567 (-) False LOC113542580
TU412644 other downstream 974166 2179543 ~ 2185944 (-) False LOC113542580
XR_004577114.1 other upstream 179902 3346155 ~ 3387730 (-) False trpm3
TU414275 other upstream 1373030 4539283 ~ 4539831 (-) True G349584
TU414706 other upstream 2155260 5321513 ~ 5364282 (-) True G349951
TU414705 other upstream 2196029 5362282 ~ 5367010 (-) False LOC113542328
XR_004577106.1 other upstream 2410367 5576620 ~ 5578981 (-) False LOC117595919

Expression Profile