RNA id: XR_003404311.2


Basic Information

Item Value
RNA id XR_003404311.2
length 1406
RNA type misc_RNA
GC content 0.49
exon number 5
gene id tm2d2
representative False

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 3156042 ~ 3166254 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAACTCAGGAGGCGGGACTTGTCGAAATACGGGTAGCGCTGCTGGGGCTTGCGCGGTTAGCATGAGAGCTAGCTTGCTGGAATGACGGATTTgtaaagagagacacagaaactTCGCCATGTCTCACATTTCTGTGAATTATGTGTTGTTAGGCGGACAGTTTTTCTTGCTCGTCTCGGTGCTGCTTTTGCAATGCCTGGAAGGGATTCACTCTGAAAACTCCACCACACCCGGAAGCAGagagacaacaacaacaacaacaacaaccacaacaacgacaacaacaacaacaactacaacaacaacaacaacagctgcATCTACTACAGTCACCGCTCTGTTCACACAGCCAGCTGAAGAAAATGTCACATACAATAACATCACGACAGCAGAGCCGTTAAATCACACGGAGCAGTATGAATACAGCCCTCCATCTCCAGTGGTCCTCTGTCGGTACCTTCCTGAGGAGTTTATATACTGCAGGGATCCTGTCGATCACGATGGAAACCTCACAGCCTTCCAGGAGCTGGGACACGGCTGCGTCAAGattGGAAATCAAGGTCAGGTGTACAAAGATGTGAATCACACACAAGTGCTGTGCACAGCGTTGGACGGCATCGAGTGTGCCGGGCCTCGAGAATTCCTCCGAGGGAACGAACCGTGCATCAAATACACGGGTCACTACTTCATCACCACGCTCCTGTACTCGTTCTTCCTGGGCTGCTTCGGCGTGGACCGCTTCTGTCTGGGCCACACAGGCACCGCCGTCGGAAAGCTCCTCACCCTCGGAGGCCTGGGAATCTGGTGGTTTGTGGATCTCATCCTCCTCATAACCGGAGGACTGACGCCCAGCGACGGCAGCAACTGGTGCACGTTCTACTGATCGCAGACGTTTCTACCCGCAAGCGCGCATCTGTTGATCCCTTTATCATGGAGTCTGCGAGGAACTGCCGTATCCGGTCCGAGGGAATTGCAAATGATATTCCTGCCGTGaccttcagtgtgtttatgccGATGACGTCTCCATCCTTGAGACACAAAACGGACAGCATAATAGCCAAATAGCatcaaatgaatgaacaatCTGGCCTTGGGAAACATAAAGGCCGCCCTGGACCACATGTTTGAGAAGTGCAATCCAAATTACATTGCTACAGAAAGTTCTTTCCATTTTAatcagaaaagcagaaatagAACAACCCATTACCTTGAGCGAGAGCGTTTTAAATGGATGGACGCATCACCCGAAATGCAACAGTatgaaaaatgtgattcattaaTGTTGCATAATGATACAGTTGTTCTGGCCTTTGCCTGGTTTTTCAGACAGCCGTGTCATTTGAACTAACGTTCCACTGCTGCTTTATACTAATAAATTACTCCATGTGTGAGGACATTTTAAAGCC

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU413141 lncRNA downstream 5626 3150001 ~ 3150416 (-) True G348640
TU412963 lncRNA downstream 324363 2779837 ~ 2831679 (-) True LOC113542231
TU412967 lncRNA downstream 354838 2773722 ~ 2801204 (-) False LOC113542231
TU412758 lncRNA downstream 561719 2549097 ~ 2594323 (-) True G348296
TU412773 lncRNA downstream 607032 2548123 ~ 2549010 (-) True G348311
TU413168 lncRNA upstream 32428 3198682 ~ 3198896 (-) True G348661
TU413170 lncRNA upstream 37837 3204091 ~ 3205284 (-) True G348663
TU413171 lncRNA upstream 37837 3204091 ~ 3205284 (-) False G348663
TU413169 lncRNA upstream 39251 3205505 ~ 3207834 (-) True G348662
TU413177 lncRNA upstream 57046 3223300 ~ 3223499 (-) True G348669
XM_034299177.1 mRNA downstream 191153 2811544 ~ 2964889 (-) False unc5db
XM_026940090.2 mRNA downstream 191153 2811544 ~ 2964889 (-) True unc5db
XM_026939600.2 mRNA downstream 354488 2793455 ~ 2801554 (-) False hdr
XM_026939599.2 mRNA downstream 354488 2793455 ~ 2801554 (-) True hdr
XM_026939601.2 mRNA downstream 364468 2786249 ~ 2791574 (-) False LOC113542230
XM_034299142.1 mRNA upstream 2024 3168278 ~ 3200058 (-) False tbx3b
XM_034299141.1 mRNA upstream 2024 3168278 ~ 3200058 (-) False tbx3b
XM_026940061.2 mRNA upstream 2024 3168278 ~ 3200058 (-) True tbx3b
XM_034299140.1 mRNA upstream 2024 3168278 ~ 3181920 (-) False tbx3b
XM_034299143.1 mRNA upstream 2024 3168278 ~ 3178189 (-) False tbx3b
XR_004577129.1 other downstream 191153 2814858 ~ 2964889 (-) False unc5db
TU412979 other downstream 370146 2784677 ~ 2785896 (-) True G348491
TU412757 other downstream 491667 2637755 ~ 2664375 (-) False zmat4a
TU412645 other downstream 924475 2179543 ~ 2231567 (-) False LOC113542580
TU412644 other downstream 970098 2179543 ~ 2185944 (-) False LOC113542580
XR_004577114.1 other upstream 179901 3346155 ~ 3387730 (-) False trpm3
TU414275 other upstream 1373029 4539283 ~ 4539831 (-) True G349584
TU414706 other upstream 2155259 5321513 ~ 5364282 (-) True G349951
TU414705 other upstream 2196028 5362282 ~ 5367010 (-) False LOC113542328
XR_004577106.1 other upstream 2410366 5576620 ~ 5578981 (-) False LOC117595919

Expression Profile