RNA id: XM_026940063.2


Basic Information

Item Value
RNA id XM_026940063.2
length 2476
RNA type mRNA
GC content 0.42
exon number 7
gene id LOC113542489
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 5524146 ~ 5532315 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTAGGCGGCTGTAGGAGTCGCATCGAGACGCGTTAGCGTTCACACTATGTAGTATGGCCACAGGCGTCCCAGATTACTTCTACACGGGTATTTTGCGCCGTCCGCTTGTGATCCGATTACCGGAGACAGATGTTAATAGCCTACCTTATCTGGAAAAAGCGGtccaattaattttatttttgtcacgCGATTATCTCTTGACCATGAGAACTGGGATTCGCCTTCAGTTGGCACATCTTATTGTGCTCTCTTCCAGGGCTCTAATTTCGGACACCAGGAACCACGAGATTTTTTGTTTTCGCACGAAGTCCGAACTTGGACGCACTCAGTGTAGTTTTCTTCGAAGACCATCTGCGGTAGCATCTGTTCTTCTTTACTGGACCATTTGGGCAGCAGAGCATCGTGTTGAAGAGTGTTCTATAAGCGCTGAGCCAGCTTTGATTCAAAACTATATGTCAGTATGTCATGAACGAGGCATCTGGGATCTACATAAAACATCATCTCTGCGCCTCAATATAACTCTGCTTTTGGAGCCTGACAGTCCATGTGACTTTCGACCAATTGCCCATGGCAACTTCAGGTGGCATAAGTACTTAGACACAGGCTATCAGGTGGGTTCTGAGACCAGAATACGCCAGAAGCGCGCTTGGATCTTACCCGGGACCCTGTGGTGCGGCCGCGGAAGCCGCGCTGGTGACTACGAGCAGCTGGGTATGTTTGAGCGTGTCGACAGATGCTGCCGAGAGCATGATCACTGCGACAGCATCATTCGCCCCTTCACTGTGAACTTCGGCGTGTTTAACCCAACTCTCTTCACCATTTCACACTGCGACTGTGACTACAGGTTTAAGCAGTGCCTTCTAGACATTAATGACACAGTCTCAAATATGGTGGGCTATACATTCTTCAATATCCTTAAACTCCACTGCTTTGAGCTTATCCAGAAGAGAAGGTGCACCAAGATCAACTGGATTGGAATGTGCACATCAGATAAGGTTGCCCCTTATGCAATCCTCAAACATCCAACAATATATAATGCCACGACTTCAAACGCTGGTATTCCTGAGCCACCAGTTTGTCAGGGAAAACCTTCAGCTAccaccaaacaaaaaaagatcaaaCTTAAACAAAGAAAGCAATCAACATCTCAAAAGAGCTATGTTCCAGGAGCTTCTGCAGCAGGGCATACATTTCTCTTGAGTGAAATTATTGGGCAGCCTTATAGTAAACCAAAGACAATTTCACCAACGTCTACCACAGGACAGCCAAATTGCCTGATGAACTTTAACACAACATTGTTCCATCAGAAATCTAAACTTATAAATCAAAGAACTCCATTCTCAACAGCAGCAAGTACTGTTCATGTGCACACAACAACATCTATAGCACCTACAAAACAAATGGCTACTCCATCAAAGAAAATTACaccaaacaaaagcaaaaacattacTCAATGGCCCATTACCACAGTACAAACCAAGCTCATCAAAAGATAtaaacctctaacatccaagcTGAATGTTGGCCCACATGGAGGTGATCATTTCCAGCCAAAACAACAAAGGGGAAAGGATGGCAAGCAGGACAGTGCATCTTTACATGGCACTGTATCTCCAAACTTCATAACATTATCTCTGGCTAGCAAACTTCCAAGGACTAACAAATTCTTTGAAAGCATGtcacaaacaaaaaaggagacAAATTTTCCAAGTAGAAAAAAGGCATCCAATGCAGTATCAAGCAGAAGTCACCAACTGAACACAAGCAAattagaaatgaaacaaaaaacagctgAAGTCAGCAAACTACCTAAGATTTCGAATAACACCAACTCTGCAACTTATAAATCAACAGCAATATGTGATGTAACCAGCCATTTGGATGACTGCAAATATAGGATCCATCCCATGGAGAAGTTATATGGACATCATAACACAGAGACAACTACAATCTACCATTGCGATTGCATACACAGGTTGACTGAACATTTAAAGCAACTGGAGAGCATTGCTTTACTGGAGAAACTTCTATGGAAATTTGTGTCCATGTCCTGCATTGAAATACCAAATACCAAGGAATGCAGCAATGATACAAGGTGTTCTACCATCCTATACACGGCAACAGAATTAGAATCTTCACTGATCAAACTGGAAGGTCAGGTTACagtaaaaaatagaaaaatacctACAAATAAAAGAGGCTCCAATCAACTTTACAAACGTTGTCTTAGGATTTTACGTCCTAGAAGCCCAAAACATGTAAAGCATGGTGCTTAACTAGTGCCAACTGGAAACGACTGAgtggaaatatttaaaatcagtattcttatgtgtaaatttctttttaatttcatattataCTCATCAGAGGAACCCAGGCTATTAAGCCTGGGTTCCTCTgatgaatataaatacaaatggaatattgtgtgaaaagatggatctcaaaatcatacagtcattgttggaaagggtt

Function

GO: NA

KEGG:

id description
K01047 PLA2G, SPLA2; secretory phospholipase A2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU414718 lncRNA downstream 5855 5517872 ~ 5518291 (-) True G349960
TU414717 lncRNA downstream 9337 5511680 ~ 5514809 (-) True G349959
TU414693 lncRNA downstream 196646 5322900 ~ 5327500 (-) False hip1rb
TU414695 lncRNA downstream 249071 5264852 ~ 5275075 (-) True G349949
TU414580 lncRNA downstream 384320 5139594 ~ 5139826 (-) True G349844
TU414824 lncRNA upstream 109570 5641885 ~ 5642417 (-) True G350057
TU414825 lncRNA upstream 110126 5642441 ~ 5645072 (-) True G350058
TU414828 lncRNA upstream 127785 5660100 ~ 5660315 (-) True G350061
TU414864 lncRNA upstream 158046 5690361 ~ 5690769 (-) True G350090
XR_004577085.1 lncRNA upstream 175608 5707923 ~ 5710474 (-) True LOC117595899
XM_026939767.2 mRNA downstream 865 5365713 ~ 5523281 (-) False LOC113542328
XM_026939764.2 mRNA downstream 865 5365713 ~ 5523281 (-) False LOC113542328
XM_026939765.2 mRNA downstream 865 5365713 ~ 5523281 (-) False LOC113542328
XM_026939763.2 mRNA downstream 865 5365713 ~ 5523281 (-) True LOC113542328
XM_026939766.2 mRNA downstream 865 5370568 ~ 5523281 (-) False LOC113542328
XM_034299056.1 mRNA upstream 43473 5575788 ~ 5578981 (-) False LOC117595919
XM_034299055.1 mRNA upstream 44305 5576620 ~ 5578981 (-) True LOC117595919
XM_034299313.1 mRNA upstream 259095 5791410 ~ 5838534 (-) False cntrl
XM_034299312.1 mRNA upstream 259095 5791410 ~ 5838534 (-) True cntrl
XM_026940110.2 mRNA upstream 259095 5791410 ~ 5838533 (-) False cntrl
TU414705 other downstream 157136 5362282 ~ 5367010 (-) False LOC113542328
TU414706 other downstream 159864 5321513 ~ 5364282 (-) True G349951
TU414275 other downstream 984315 4539283 ~ 4539831 (-) True G349584
XR_004577114.1 other downstream 2136416 3346155 ~ 3387730 (-) False trpm3
XR_003404311.2 other downstream 2357892 3156042 ~ 3166254 (-) False tm2d2
XR_004577106.1 other upstream 44305 5576620 ~ 5578981 (-) False LOC117595919
XR_004577154.1 other upstream 524666 6056981 ~ 6120959 (-) True pappab
XR_004577155.1 other upstream 524920 6057235 ~ 6120959 (-) False pappab
TU415368 other upstream 814580 6346895 ~ 6352372 (-) False LOC113542569
TU415778 other upstream 1232599 6764914 ~ 6775149 (-) True G350867

Expression Profile