RNA id: XM_026940065.2


Basic Information

Item Value
RNA id XM_026940065.2
length 2504
RNA type mRNA
GC content 0.47
exon number 21
gene id LOC113542490
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 2465572 ~ 2482183 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTTGGGTCGCATTCTCTTCATAGCAGCCATAGGAATGCTGAGGATGGCAACTGTCCGTCTCGGGCTGTGGATCCTCGTGGTTTTAGTGTCATCCATCCACTCAGATGGACAGGAAATCTATGAGGTGGTTCGACCAATCAGACTCCATGATCTTCATAAAAGAGCTTTAGAGACCGCCAGGCCTGATACACTGAAATATGCCATGACTCTTGGCGACAAACACATTGAAATGCATCTAGAGAAAAACCCTGATTTTATACCTGAGGACTACACTGAGACTCATTACATGAGCGATGGGACTCCTGTCGTAACTAAACCTGATGAAATGGATCTCTGCTACTACCAGGGGAAGATCATGAATGACAGCAACTCTCTGGTCAGCATGAGCACCTGTGATGGATTACGGGGTTATTTCCAGACTGCAGGACAGAGGTTTATTATCGAGCCTGTGTCTGAAGACACTGATGGTGAGCATGCGGTGATGAAGTATGAAGATGTGATTGATTCTCCTTCTGTATGTGGAGTCACCAACACTACCTGGTACCCTGTTCCTGAAGGCTTCCCAGGCTCTTCCCCTGGCAAATCTAAAGCTCGCATATCAGGGCAAACATTGCTACAGCAAAAGAAATACAATGAAGTCATCCTTGTAGTAGACAACAGAATGTATCTGAAGATGGGCAGTAATGTGACCGAAGTGAGAAAGAGGATCTTCGCTATTCTCAACTTTGTTAACGTTgtATATAAACCGTTGAACACTTTCATTGCTCTGGTTGGTCTGGAAATTTGGACAGATTCTGATAAGATAGCGGTGAATACGTCAGCTGGTCAGACACTGGATGCGTTTAATAAGTGGAGAAATACCGTTCTGATGAAGAGCAAGAAGCATGACAACGCTCATCTGATCACTGAAATCGACTTCGATGGGCCGACAGTGGGCCTGGGTTTCATTGGCACCATTTGCACGTCCTTCTCTACCGCAGTCATCCAGAACCACAATACCATAGCCACAGCTGTAGGTGCCACTCTGGCACATGAGATGGGACATAACATGGGTATGAACCACGACGGCAGCTCGTGTGGATGTGCCGGGGGCAGCTGCATCATGGCTGCCTATCTGAGCTACACCATCCCGCAACTCTTCAGCAACTGCAGCCTGACCAACTTTGATGAGTTCCTGAACTCACGCAACCCTGAGTGTCTCCTCAACAAACCACTTGCCAGCAACCTGCTCCAGCCTGCAGTGTGCGGCAACGGCTTCCGCGAGACTGGGGAAGACTGCGACTGTGGATCCGTGCAGgagtGCAACAACCCGTGCTGCAATGCCACCACGTGCACATTCACAAAGGGCTCAACATGTGCCGAGGGAGAGTGTTGTCAGGACTGTAAGATCACTGGTGCCACCCTGCTGTGTCGTCCCAAGCGTGACGAGTGTGACCTGCCTGAATATTGCACAGGAAATTCAAGCTCATGCCCCGAGGATGTCTTCTCCATGAATGGTTCGCCATGCAAGAACAGCACTGGCTACTGCTACAATGGCCAGTGCCCAAAACGGGAGAACCAGTGCATCAAAATGTGGGGTTCAGGTGCCGTGGTAGGGGTCGATTTCTGCTATGAGCAGAACACAAGGGGAATATACTACGCTTATTGTACACGACCCAACAACACCCAGTATATAGGGTGCCAGAAACAGGATGTGAAGTGTGGGAAGCTTTTCTGCGCAAACGGCCAGGAGAACCCAAACTATGGCCGCCTTGTTGAGTTCAGCACCTGCAGAGCCACTTTCTACAGCGACAGCACCGAAGATTTTGGTCAAGTGGACACAGGAACCAAGTGTGGTGAAGGGAAGGTGTGTAGTAAGAaccagtgtgtgagtttagacGCCGCCTACAACACAACCAACTGCACAGCTAACTGCAAAGGCAATAGGGTGTGTAATCATAacctgcagtgtgtttgtgcaccCAACTGGCTCCCACCTGACTGTGTGATCCCAGTCAGCAGATCTCAATCTGCAGATACAAGTCCACAGATTGGCATTGCTGTGGCTACCGTTATCCTGTTGGGGGCTGTTTTAGTCGGGTTGGCCATCTACTGCATGAAATGCAGGAAGAATCAAAGCAGTTCAACAACAGCAAACCGTTCTCCAAAGTCTACTGTAAACGTCTAACGCTTTTGTACCTCCTCACCGGGATTGTGAAAATCCAGCCTAGGTGGGACGGTCATACAGAACACAAGCAGCACTGAATAGGATTACGTTTTTTTACAGGCTTTCACAAAAAGTACTTGAAGAGGACGGATACtgtaaaattattcattaactCAGGAAgatctacagtggatataaaaagtctacacaccccctgttaaaatggctgtTTCTTGTGAAGTAAAatatgaaactaagataaatcatgtcagaacttttcccacctttaatgtgaaattgcaaaatatacaaataaagtgaaaaacaatagaaaaaatgcatttgcataagtgtgca

Function

GO: NA

KEGG:

id description
K08614 ADAM28; disintegrin and metalloproteinase domain-containing protein 28

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412742 lncRNA downstream 41241 2423715 ~ 2424331 (-) True G348283
TU412719 lncRNA downstream 64079 2400857 ~ 2401493 (-) True G348264
TU412721 lncRNA downstream 64079 2401033 ~ 2401493 (-) False G348264
TU412672 lncRNA downstream 156968 2306125 ~ 2308604 (-) True G348233
XR_004577113.1 lncRNA downstream 222756 2242208 ~ 2242816 (-) True LOC117595926
TU412771 lncRNA upstream 63232 2545415 ~ 2546515 (-) True G348309
TU412772 lncRNA upstream 64389 2546572 ~ 2548040 (-) True G348310
TU412773 lncRNA upstream 65940 2548123 ~ 2549010 (-) True G348311
TU412758 lncRNA upstream 66914 2549097 ~ 2594323 (-) True G348296
TU412967 lncRNA upstream 291539 2773722 ~ 2801204 (-) False LOC113542231
XM_026940243.2 mRNA downstream 7167 2435324 ~ 2458405 (-) True LOC113542614
XM_026940273.2 mRNA downstream 102417 2357271 ~ 2363155 (-) True ogfod2
XM_034299099.1 mRNA downstream 182579 2252981 ~ 2282993 (-) False tacr1a
XM_026939880.2 mRNA downstream 182580 2252981 ~ 2282992 (-) True tacr1a
XM_034299412.1 mRNA downstream 255831 2201716 ~ 2209741 (-) False ncaph
XM_026939656.2 mRNA upstream 119351 2601534 ~ 2664482 (-) True zmat4a
XM_026939548.2 mRNA upstream 218814 2700997 ~ 2712386 (-) True sfrp1a
XM_034299212.1 mRNA upstream 263964 2746147 ~ 2773403 (-) True loxl2b
XM_026939603.2 mRNA upstream 298804 2780987 ~ 2782082 (-) False LOC113542231
XM_026939605.1 mRNA upstream 302378 2784561 ~ 2785074 (-) True zgc:153409
TU412645 other downstream 234005 2179543 ~ 2231567 (-) False LOC113542580
TU412644 other downstream 279628 2179543 ~ 2185944 (-) False LOC113542580
TU412577 other downstream 467102 1995902 ~ 1998470 (-) True G348145
TU412500 other downstream 636927 1827898 ~ 1828645 (-) True G348096
trnak-uuu_19 other downstream 867030 1598470 ~ 1598542 (-) True trnak-uuu_19
TU412757 other upstream 155572 2637755 ~ 2664375 (-) False zmat4a
TU412979 other upstream 302494 2784677 ~ 2785896 (-) True G348491
XR_004577129.1 other upstream 332675 2814858 ~ 2964889 (-) False unc5db
XR_003404311.2 other upstream 673859 3156042 ~ 3166254 (-) False tm2d2
XR_004577114.1 other upstream 863972 3346155 ~ 3387730 (-) False trpm3

Expression Profile