RNA id: XR_004577129.1


Basic Information

Item Value
RNA id XR_004577129.1
length 3121
RNA type misc_RNA
GC content 0.55
exon number 16
gene id unc5db
representative False

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 2811544 ~ 2964889 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGCGCTTGGGAGCGGAGTGACGGTGGCAGTTGGATAGCTTCGGCTTTAGTATGTGAAGttatcctctttttttttccccctctctcgttttttatttggaaaacaTTTCACTGAAGCCACTGAGGGTGTAGAAAGAAGGGAAATGTTGCGTATTTGAGGAGGAAAAGACCACAGAGATGCCAGCTCTGAGTACTAGCGGACGCTGTTGGGACGTCGCCTTGCTGCTCCTCCTGTGCGCGGAGTGCGCGTGCGGCCGAGGAACTGCAGGAGACGCCGCTTCCGATTCGTCCTCAGTCGGCGGGACGTTGCCGTACTTCCTGCAGGAGCCAGAAGATGCTTACATCATCAAGAGCAACCCAATCCGGTTGCGGTGCCGTGCCACTCCGGCCCTGCAGATTTTCTTCAAGTGCAACGGGGAATGGGTTCACCAGAACCAGCACACGGTCCAGGAATATACGGACCAGAACACGGGTCTGAAGGTGCGTGAGGTGATGATAAACGTCTCCCGGCAGCAGGTGGAGGATTTCCACGGCCCTGAGGATTACTGGTGCCTGTGCGTGGCCTGGAGTCACTTAGGCACGTCCAAGAGCCGCAAAGCCACCGTACGCATCGCCTACCTCCGTAAGAACTTTGAGCAAGACCCACAGGGGAAGGAGGTTCCCATCAGGGGCATGATCGTTCTGCACTGCCGGCCTCCAGAGGGTGTGCCTGCTGCCgaggtGGAGTGGTTAAAGAACGATGAGCTGGTGAGTTCGCTCGACGACGACAACATCGACACTCGAGCCGACCACAACCTGATCATTAACGAAGCACGACTCTCCGACTCGGGGAACTACACCTGCCTGGCCAGCAACATCGTTGCCAAGAGACGCAGCGCCACGGCTACTGTGGTCGTCTTTGtgaACGGAGGCTGGTCTCTGTGGACGGAGTGGtctcagtgcagtgtggattGTGGGAGAGGAGTACAGAAGCGCTCTCGGACCTGCACTAACCCGGCTCCGCTGAACGGAGGAGCGTTCTGCGAGGGCATGTCCGTACAGAAGAGCACTTGTAACGCACTCTGTCCTGTGGATGGAGGATGGGACGAGTGGAGCGAGTGGACGGCGTGTAACGCCCAGTGTGAGAGGCAGAGATGGAGGGAGTGTACCGCTCCTGCTCCTCGCAACCGCGGAAGAACCTGCGAGGGCAAAGGTCATGACATGGAGAACTGCACCGGCGACCTGTGCACTCAAGATGGGAAGATGCTGCATGATGTTAAGCCTCAGAGTATGGATGGCTCCAACGAGGTGGCACTGTACTCGGGACTGGCAGCAGGAGCCATCGCCGTCACTGTCCTCATCATATCTGTGACGCTGTATCGCCGGAGCCAGAGTGAATACGGAGTGGATGTCATTGACTCGTCTGCCCTCGCTGGTGGATTCCAGTCCTTCAACTTCAAATCTACCAGACAAGGCAATCCTCTGCTTCTGAATTCATCTGCCCGGCCTGAGCAGACCTACAGCTTCCGTGACTCTGTGGGGAAAGAGTTGTTCGACCCGCTGCCTGACGCCACGGCTAAAGTCCAGAGCTCCTTCACAGCCGAGTACCACGCCAAGACTTACCCCCAGGGCCTGGCGTCGCCGGTACCCACAAACAACGGACCCTACAACTCCTACAGGACTCATCTGAGGAGCAGCGGCATGTTCGGACACCAGGGAGGACGACTGGTCATGCCCAATGCAGGAGTCAGTCTGCTGGTGTCCCACGGGGCGATCGCCGAGGACACGTCCTGGGAAATGTACATGCTCATCGATCAAGGAGAGTCCAGCGCACCATCATTAGAGAGATGCGAAATCCTGCTGGGGCCAGAGGTCACGTACGGCCCCCCAGGCCTGAGCCTGACCTCCCCAGTTGCCATGACGATAGCCCACTGTGCCGAGGTCACCGATGAGAACTGGAGCGTTCGCCTGAAGAAGAAAACGAAGGACGACGAGTGGGAGgaagtgatgtcagcAGAAGACGATTCGACTTCCTGTTACTGTCTCCTGGACTCTGGAAGGTGCCACCTGTTGCTGAGCGAGCCGGGCTCGTACGCCCTCGTGGGTGAACCGCTGAGCGACGGCGCCACCAAGAGGCTGAAGGTGGCCGTGTTCGGCAGCTCACACTCCTCTATGAGCTACAGCCTGCGAGTGTACTGCGTAGACGACACACCTCACGCCTTTCAGGGAGTGGTGACTGCAGAGAGCAACAGACATGGCTTGCTCCTGGAGGAACCCAAGACTCTTCTGTTTAAAGGGAACACCTACAGTCTACAGGTCTCCATCCAGGATCTACCCCAGTTCCCATGGAGCATCAAACCCTTTAGCACCTGTCAGGCAACACCTTAGCATTAACTGCTAAGGAGCGGTCAGATTCCGCTCACACCAGagaggagatgatgatgatgatctaaCACCTTGCGAACATCATGAAGGCTTGTTAATCAGCAGACGAGTCGAGTCAGGTGTGGTAGGGTCCCGCTAGGCTGGATTTAATCTCTTGCCTGTCTCCTCCAGCTTAACACCTGTCCTTTTTACACTGATCTGGAATCAGCTCTGAGGACGTTTGTTGGATTAGGGTTTGGAGGAAGCAAGAGAGAAGCTGACCCTAGAAATAGAGGACTGTCGGTATATAACGAGATAAAGGGATCTGAAAGTTTGACTGCTCGACGAAAGTTTTCCAGTGGGAAGTGAGAAGGCTAGACTCTAGACTACAGGCCCATTATGCACCTCTTCTGTCCCTCCATGAAAAACAGCCTCTCATGAATGCGGGTTGTGGGAAGTCAAGGACGCTCTCTGCTCTTGTGCCTCATTGCTGAAATTAATTCGACATCAAAGCTGACGTTGCTCTCCGGCACTCATGTACTGTGCGCGTGAGGCTTAAACCGAGAGCGACCTGACTGCTGGAATTAACAGGGATTTGGGTCCGAGCCTGGTTTTGTCCTGAACTTCTCAAATTCAGCTCTTTTAGCTGAGTAGCAGTGTTGAGTCAGTGACTTTACTCACATCAGTGAACACTgagtTCTCCTTCTCGCAGGTATGGAGCAGTAACCAGCAGCCTCTGCACTGTGCCTTCTCTCTGGAGCGCTTCAACGTCGGCACC

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412967 lncRNA downstream 13654 2773722 ~ 2801204 (-) False LOC113542231
TU412758 lncRNA downstream 220535 2549097 ~ 2594323 (-) True G348296
TU412773 lncRNA downstream 265848 2548123 ~ 2549010 (-) True G348311
TU412772 lncRNA downstream 266818 2546572 ~ 2548040 (-) True G348310
TU412771 lncRNA downstream 268343 2545415 ~ 2546515 (-) True G348309
TU413141 lncRNA upstream 185112 3150001 ~ 3150416 (-) True G348640
TU413168 lncRNA upstream 233793 3198682 ~ 3198896 (-) True G348661
TU413170 lncRNA upstream 239202 3204091 ~ 3205284 (-) True G348663
TU413171 lncRNA upstream 239202 3204091 ~ 3205284 (-) False G348663
TU413169 lncRNA upstream 240616 3205505 ~ 3207834 (-) True G348662
XM_026939600.2 mRNA downstream 13304 2793455 ~ 2801554 (-) False hdr
XM_026939599.2 mRNA downstream 13304 2793455 ~ 2801554 (-) True hdr
XM_026939601.2 mRNA downstream 23284 2786249 ~ 2791574 (-) False LOC113542230
XM_026939602.2 mRNA downstream 23962 2786249 ~ 2790896 (-) True LOC113542230
XM_026939604.2 mRNA downstream 28921 2785439 ~ 2785937 (-) True LOC113542232
XM_026940048.2 mRNA upstream 195221 3160110 ~ 3166253 (-) True tm2d2
XM_034299142.1 mRNA upstream 203389 3168278 ~ 3200058 (-) False tbx3b
XM_034299141.1 mRNA upstream 203389 3168278 ~ 3200058 (-) False tbx3b
XM_026940061.2 mRNA upstream 203389 3168278 ~ 3200058 (-) True tbx3b
XM_034299140.1 mRNA upstream 203389 3168278 ~ 3181920 (-) False tbx3b
TU412979 other downstream 28962 2784677 ~ 2785896 (-) True G348491
TU412757 other downstream 150483 2637755 ~ 2664375 (-) False zmat4a
TU412645 other downstream 583291 2179543 ~ 2231567 (-) False LOC113542580
TU412644 other downstream 628914 2179543 ~ 2185944 (-) False LOC113542580
TU412577 other downstream 816388 1995902 ~ 1998470 (-) True G348145
XR_003404311.2 other upstream 191153 3156042 ~ 3166254 (-) False tm2d2
XR_004577114.1 other upstream 381266 3346155 ~ 3387730 (-) False trpm3
TU414275 other upstream 1574394 4539283 ~ 4539831 (-) True G349584
TU414706 other upstream 2356624 5321513 ~ 5364282 (-) True G349951
TU414705 other upstream 2397393 5362282 ~ 5367010 (-) False LOC113542328

Expression Profile