RNA id: XM_034298933.1


Basic Information

Item Value
RNA id XM_034298933.1
length 1733
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC113542514
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 2169335 ~ 2178059 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTGAGCTCAGAGGACTGGGAGAGAGTACAGAGAGAAGAGCTTAAGGGAAACAAAGGACAGAAATCAAGATCAGAGCTGCTGGCTGTCTTTCAGACATCCTTTAGAAGAACCTGTCAAgacaagaacacaaacacagagacaaacaaGGATCGATATGgagaaaggagaaagcCGGGTGCAGCAGCTTCAGGAGGATGTGGAGGAGGTTCGGGTCATCATGCAGGACAACATCGAAAAGGCCAGAGAGCGCGAGGGAAAACTAGAGGAATTGGACGAGAGAGCTGAATCGATGCTTAAGAGTaGCACACAGTTTCGGAAGTCAAcaaaaagagtgagaaaaactGTGGAAATTGAGAATACATTGTTGCCGTGTAAGAACAGGAAGGTGATCGCGGCCATCGCTGGAGTAGTTGTTCTggtcatcatcgtcatcatcgtcatcatcgtcgCATCACAAGGCCAGAGTCAGAACTGAGAGAATAGAGACTCTGGTTAAAAAGCCAGAGAAGAAGAAGTGATGGGCGTAACAACTATTTATGCTACTCAggagtgggttttttttttgttctgtgttaAAATTTGTATTCAGATGGTACATGTAAACACTTTCTGCTGCTTCAGTCtccattttttatattgtttgtaaggctttgatgtgtttatacttttatataaagatgtgtgtatctgttgaggtgaactgcacaaactgtaacTACATACTGGGGTAAGAATGAAATTTTTTTGGACATCTACAGACCATGTAAATGTCTGTTTTGCCTTAATACAGGATATTTAATACTTACAGAATACAATAATGTGGATAAATTGACTATAGGTGCATGGTCAAGGAAAATGGAGGAATATGGATCTTGtgtggaaaaggaaaaatatgttaaatattacCTCTGATTTGCCTCTGGAGTCATTAGAGATTTCAGTATTCAGTGCCtacttctgcacttgtgacgCACACTCCttgctgtttgtgtttactCTTCTATATCTACAAGAGTACTGGTAATTTTTTGAGTCTGCTTCCTCTCGAGGTTTTTTCCCTCATgtcgtctcggggagtttttcctcacctatgtcacctctggcttgtgcaTTACGGATTTACATTTGGATTACTGTTTtgtgattatactgtatattgttacacaaatacaaataaaattgatatatatatgtaaaaaaaactaaacattaaCAGCAGAACCATGGCTGAAGGACACCAGGGGTTTCTCTGGGTTCAGGGTTCTCACTCATGAACTTCCAGtcatccggagtctatcccgggaacactgcaCATGAGGTAGGAATACGTAccgaatgggatgccagtccatgcacacacactcatactcacacactcatccacacctAGAGGTGATTCATCATAGTCAATCCACCTCCTGGCCTGTTTCTGAGAAGTGAAAGGAAAACTGAGAACCTGGTGGAAACCCCTGCAgatacagggagaacatgcacacacacacacacacacacacacacacacagtaacctgagatCGACCCCGGAACCCTGGAGACCTGAGGAGGAAATGTAGCCTTGTTATGTTTGGTGCTGATGGGACTCTATGATTGTGGTCAAACCAGCCGCAGTAGAAAATACAGACTTTTTACAGTAAACTCCAGGTGTTTGGGGAAAGAAGCTGCTGCACATCTGTTTTAGTCACTTAAAAAATGTTACTTCCTCACTTTCtta

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412635 lncRNA downstream 27233 2141616 ~ 2142102 (-) True G348200
TU412579 lncRNA downstream 135471 2033557 ~ 2033864 (-) True G348147
TU412516 lncRNA downstream 148200 1982054 ~ 2021135 (-) False arvcfb
TU412574 lncRNA downstream 182288 1986183 ~ 1987047 (-) True G348143
TU412511 lncRNA downstream 226624 1805996 ~ 1942711 (-) True G348103
XR_004577113.1 lncRNA upstream 64395 2242208 ~ 2242816 (-) True LOC117595926
TU412672 lncRNA upstream 128312 2306125 ~ 2308604 (-) True G348233
TU412719 lncRNA upstream 223044 2400857 ~ 2401493 (-) True G348264
TU412721 lncRNA upstream 223220 2401033 ~ 2401493 (-) False G348264
TU412742 lncRNA upstream 245902 2423715 ~ 2424331 (-) True G348283
XM_026940198.2 mRNA downstream 2953 2164473 ~ 2166382 (-) False LOC113542577
XM_026940201.2 mRNA downstream 2953 2164473 ~ 2166382 (-) False LOC113542577
XM_026940200.2 mRNA downstream 2953 2164473 ~ 2166382 (-) True LOC113542577
XM_034299307.1 mRNA downstream 5415 2156986 ~ 2163920 (-) True rnf181
XM_026940308.2 mRNA downstream 107434 1983408 ~ 2061901 (-) False arvcfb
XM_026940205.2 mRNA upstream 1726 2179539 ~ 2186080 (-) True LOC113542580
XM_026939754.2 mRNA upstream 13772 2191585 ~ 2199551 (-) True vamp8
XM_034299412.1 mRNA upstream 23903 2201716 ~ 2209741 (-) False ncaph
XM_034299411.1 mRNA upstream 23903 2201716 ~ 2209741 (-) True ncaph
XM_034299099.1 mRNA upstream 75168 2252981 ~ 2282993 (-) False tacr1a
TU412577 other downstream 170865 1995902 ~ 1998470 (-) True G348145
TU412500 other downstream 340690 1827898 ~ 1828645 (-) True G348096
trnak-uuu_19 other downstream 570793 1598470 ~ 1598542 (-) True trnak-uuu_19
XR_004577143.1 other downstream 638941 1528778 ~ 1530394 (-) False LOC113542373
XR_003404299.2 other downstream 638947 1527592 ~ 1530388 (-) False LOC113542373
TU412644 other upstream 1730 2179543 ~ 2185944 (-) False LOC113542580
TU412645 other upstream 1730 2179543 ~ 2231567 (-) False LOC113542580
TU412757 other upstream 459942 2637755 ~ 2664375 (-) False zmat4a
TU412979 other upstream 606864 2784677 ~ 2785896 (-) True G348491
XR_004577129.1 other upstream 637045 2814858 ~ 2964889 (-) False unc5db

Expression Profile