RNA id: XM_026940110.2


Basic Information

Item Value
RNA id XM_026940110.2
length 7622
RNA type mRNA
GC content 0.49
exon number 40
gene id cntrl
representative False

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 5791410 ~ 5838534 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCATAAAACGTGGACATTTAAGCAAGGCTTCAGTGAAAACATTCTCCGTTTTTgtgttttccagtttttttcaggaaaggtgTGTGAAGTTAGCGCCATGTTGTCAGGCAGATAGAGCTCCCGTTAACGGCGTTAGCTCTGTGCGCGTGTGTAGCTCCGTCTCCATGGAAACGGGCTCGGCACACTGGCAGTGCTGCTTTCCAGCCAAGCTAACAGCTCCTCACTAATAAAAACGGAGATACAGTGAGGATAAAGTGTGTAAGAAGCTCGCAACATGATTAGTTCATGTTATTAAAATATGCGCTCAGTGACATGGAACACGCTAGTGCAGCGGTTAATCAGCAGCCTCACCAGACTAGTTAAAGACGCTAGCTAAGTTAGtacagctagctaactaagTGACTAAATTATAGCAGTCAGTTATCAGGCATTTAAACTAGATTAAAGCACAGTGACGCAACTGAATTACAACATGTTGTGCTAGTATAGTGAATATTCCTAGTGGAAAGGGCTCATTGAGGTGGTCTGTGCTGTGAAAGCGAGGTGAGTTGCAGAGCTAGCTAACGGTGCTGCTGTGAGTCCTGGCGAGCATGAAGAGGACGAGTGATTCCTCCAGAGCCTCGTCTGTGCACAGAGTGCTGAGTTCAGCTCCGGCTCcggctcctgctcctgctcctgctcctgctcctgctcctgctcctgctcctgctcctgctccggCCCACAGCCTGAGTGAAGACGCAGCTGAGCTCAGTGAAGACGATGAAATCAAATGCACAGGAACACGGTACATCACTGAAGACTTTCTTAAGAAGTTGACCAAGCAAGACAATTTATCCCTTGTGCGCTCCTTGAATCTGTCCACTCCTCATGGAGATAAATACTTCAGGTACATTGAGAACTTGGACAAGTGTGACCGTGTTCAGGTTCTTAACCTTAGTAACAACATCATAGAAAAAATGGAGAAGTTGGAGAGGCTTCATCAGTTGCGAGAGCTGCACCTTTCCAATAACAGAATAAGGAAAATAGAAGGCCTAGAGCAAATGGCAAACCTACAGATCCTGAATCTGGAGAATAACAGCATTGAACAAGTGCCGCTGTGGGTCGGGAAAAAGCTCAGATCCCTTCAGAAGCTAAATCTTCAGAAAAACAAGATATTTTCGCTTCATGAGCTCACCAAATTGAAGCTTCTAAAAAGTCTAACTGAGCTGAAGTTAGCAGAGAACCCTGTGTCTGACCTTCCCCACTACCGCCTCTTCTTAGTCTTCCACCTGAGATCTTTAGAGTTTCTGGATGGGCAGCCAATCAGCGAGCAGGAGCGAGAAAAAGCCCATCAGCGCTTTCACACTGAGGAGGTAGAGCGTCTGGAGCAAGAGCTGGAAGAAAGAGGAGCAGAGATAGAGCGACTGCAGGAGGAGAAAGCTGTAGCATTAAAGGAGTTGGAACATCAGGAGAAGCTCCAGCAGAGTCTGAGGCAGCAAAGCCAGGAGCAGCAGTGGCGACAGGAACAGCTTGAAATGGAGCTGGACACCAAGTCCGAACTGcTAAAACAGAAGACCACAGAGCTGACCCGGGCCTGCCAGAAGCAGTATGAGCTTGAGCAGGAGCTGGCTTTTCACAAGATAGATGCTAAGTTTGAACCACTTCCATTTTATCCTAATCATGACCTGGAAGGGGATGTGCTGGGTGAGAGTCCGTACATTGGAAAAGCCCGTCACAAAAGGAACACATTTACATCAGACAGTGTAGATACAGGGTTCAGGCATCTGGCCAAAGGAGGTCTCGCACATACAGACAAATTGGAGGAGGATGAGTTGGAGTCGCAGGATTTGGCAAGAGCAGAGGAGCGGCTACAGCAGCTGCATAAGGAGATGGAGTACAAAGAGCAACAGATCCTGAGAGCCAGCGAGGAGCTGCAACAACTAGAAGAGGCAGCATCTCAAAAACGAATTTCAGAAGCAGAGAAGGACCATCTTAGACAGCAGCTGCACGTGAAGATCCAGAAGCTGTGTGAGATGCGGCAGGAggcagagaacctggagaagcAGCTGGACAGGCAGAGCTCTAAGCTCAGTGAGGCTCAAGGGGAGCTGGACCAGCTCCAGAGCTTACTGCACACTTTGAAGCCAGAAGACCTCAGACACgcTCATGTGAAGGCTCAGTTGGCCAGTAAGAGTCAGCTGCTGTCCATCATGAGTAAGAAACAGCACGAGTTGGAAGGCCGGCTAGATGACATGCTCAGTCGCATTGCAAAGGAGACACAAGAGATCAAAGATCTAGAACAACAGCTTACTGAGGGTCAGATAGCAGCTAATGAAGCATTGAAGAAGGATCTAGAGGGCATAATCTCCGGCCTGCAGGACTACCTGCATGGGGTGAAGGATCAGGCTCGACAGGCCCAATCTGACTGCCTGCGCCTGCAGAAGGAGAAAGACACTCTACAGCAGCTCCTCTGGGACAAAGATCAACAGCTCAGCCGACTGCAGCAAGTAGCCCAGATCTGTGAAAACACAAAGCAGGAGTTGTTGCAGCACCAGGAAGAGTTACAGGCTCTGCGGAGGGAGAACGTAGAGCTGAGGGAGGCTCAAGGTCAGGTCAGTGCATATGAAGCTGAATTGGAGGCTCAGCTGCAAGAGAGAGACTTTAAGGCCAGCCACCTCAAAGAGGAGCTGAGTCGATTGCAGCGGCTCAGTCAGCTGGAGCATTCTGCGTTGCAGGCGGAActgcagaaagagagacaggccAAGGAGAACGCGCTGGCTCAGCTGCAGctagctggagagagagagctggagaacACTGATCTCCTGCAACAGCTCAACATGCTGCAGAGGGAGAAAAGTACTCTAATGGAGAAGGTCAATGTCTTGCAAAAAGACTTTCAGCAGATCAGGAAGGAGCTGCTGTGCCCTAAACAAGTAGCCAAGAGTTTGCAGGGGCTGAAGAGAATCATTGCGACAGGCTCAGGGGAACTAAGCAGAGTGAATGGTGATGGAGATGTGCTGAGTGAAAGCTTGGCCGAACTGCAGGAAGAGCTGCAGCGCACAGTTTCTGCTGCTTTGAGAGACCGAGATGAGGCCCAAAGTGCCCAAGATAGGCTGGCACGTGAGCTGGGCATTCTCAGGAACAGGCTTACACACTATCAGCAGAAATACCAGAGTGCATGTGAAGAGGCTCGACAGGCCAGGGCAGTAGAGAGATGTGAGGATGAGGCTGAGCTCCTCCAGCTGAGGGAGGCGCTGCATGAGGCACAGGAACAGCAGTACCTGACACTGCAGCGTCTGCAAGAAGccgagagtgagagagatcgTCTACTTTTGGAGTTCAAAAAGCAAGACAAACAggTAAAGGCTGAGGAGACTCTAACACAAGAACAGATTCAGTCCTTGGAGCTGGAGTTGAGAGAGCTTAGGAGATCCTTCACTATTGCTGATCAACTGGCTGCCGAGCAGCTGAATGCTGCCACGGACGAGCTTCGCTCGCTCCACAGCACAGTGCACAGAATCAATCAGGAGAGAGTAGAGGATGCAGAGGAGCTAGAAGAATCCAGGATGGAGGCTGCTCAAGCTATGCAAGATCTAACAAAGGCAGAGGCAGAAATACAGGTTCTACAGAAGCTGCTTCAGGACAGGgtTCATCTATCAGACACAGATAGCCTCAGTGTCCCTCACCCCAGTATTCAACAGCAGGAGTTAGCCAGACTGAATCGAGTTTTGAAAAGGCAACAGGTTCAGACCAAACGGCTTCGAGATCAGCTGGCTCAGGCACTACAAGATAACAGTGGAAACCTGGAGGAGCTGATCAAGGAAATAGAAGCCCTTAGAGATACTCTGCTGCAGCAGAGCAATTACCTGTCCAATTTCATGCGTACTCCACACAGCAGTGGATACTGGTACTATGTACCACCATACCAAGATCACCCCAGTCTTGGTTCTCAGGCTACACAGGACTCTGGCCTGGGTTCTCAGTATGTCCCATCACCTGACAGAGGCAAACATTCCAGAAACCAGCAGCACAAAGACACAAGACCCTCTTCCAGTTCAGGATACTGGGTTTATTCTCCCCACCCACATGACCAACACAATTATGGGAAAAGAGAGTCTTCATACAGAAACAGCGATGGAGAGAGTGATGAGGATGGTGTTAGAGGAGCTCATTTCACCCCCCCACCAGGCTCAATCATCTACACTGTGCCCCCTGATGGCACCCATCTTCCCCCAGGCATGGTCATCTACGCCCCTCCTGTACCAGGCCTGGCCGTGGGTCCTGGTGCAGTGTTTTATGGCCCTCCGCCTGAAGGGGTCAGGCTGGTTTATGGCCCTCCTCCGAGTGGGCTACATATCCCTCTCATCCCTAATGGCACTCTACACTGCAATGTGCCTGGCCATCTGGATATGaCACACTCTTCAAGAGTAGCAGACCATTCTTTAAGGGAGGAGCAGACAGATAGAGTGGCAAGTGAGCGGGAACTGCTCAGGCTGGAGGAGCAGAGATCAGAGTTGCAGATGGAGCTTAAAGAGCTGCGGGGAGCTGTGAGCCGACTTCAGCGCCACAAGAGGCTGTTGGAAAGTTCAGTTAGCCGTGCAGAAGAGGACACTGTAATGGATGAGATGGAAGGTCTGGAGAAAACTCTCCTCAAACGCAGGACAGACCTACGGGATGTAGAGCGCCTGCTGTCAGAGGCTGAAGCAGACCTGAAGGATACCAGAGCTAAGAGCAAAGACACTCTGCAACGCTACAGCAAAGCTGAGAGACAGTTAAAAGAGGCAGAATGTGAGCTTGAGGAGATTAAACAGCGAACCCAGGATAGCACCAGACAGCTAGTACAAACCAGACAACAGCTCCGGGATCTTCAAGAAGAGGTAAAGGATCTGCAGAGATGTAAGCAAGATCATGAGAACACACTAAAACAGGTGGAAAAAGTGATTGCAGCTCGAGATGCAGAGTTCCAAGAAGTCAACAGAAATCTAAAGAGAGTAACCAATAAAATGGAGGACATGCAGAAAGAACTGAGAGAAACACAAAGCCAGGAAGCAAATCTTTTTATGGGCTGCAGGGACTCTGAGGATATTCTACACACCCGCAATAAAGAGCTGGAGCATCTAAACACCCAGgtgcagCTACAGAAGGAACAGCTGTCTTTGCTGGGGCGGAAGCTAGAGCAGTGGCGGGAAGAGGAGGACATTGTGAGGACAAATGTAGAAAAGCACAGGCAGAGCCTGGTGGAGGTGCTGAGGCAGGGAGAAGAGGACGCGCACAGTCTGCAGCAACACATTAAGgagctaCGTGTGGATGTGCAGTGTCTGGCTGTGCAAAAGGGGGAACTGGACTCTCAGCTCtcagagaggagaagaaggCTGGCTCAGTATaaaaaggaggagaagaaagttCAAGAGAAAGTGCAGAACCAGCGTGCAGTCATCAACAAGCACAAAGCAGAGCTGAAGCATGTCCTGGACATGATCCAGTTGGAGAGTGTGGAGCTAGAGAGAGTGAAGGTTCAGCACAACCAGAAACTGGACCAGGTGGAGAAGAGCCAGGAGAGTTTGCTACAGATGCGTCTGGAACTGCAGGAGGTGGAGAAGGAGCTGCAGGAGCAACAGGCTGAGCAGGAGAGGCACAGAAGGCTGCAGGAGCAGGAGATCCTCACGTTGAAAGAGCAGACTAATGCTGCAGACATAGAGAGGAGCAGCCTGCTGGAGCAGTGCACCAGCCTGGAGGCCCGCCGCTCACATGCTCAGAGATGTCAGGAAACAGCAGAGGAGGGGCTGCAGAAAGCAGAGGCAGAGCTGCTGAAACTGCAGGCAGATCTGGCCAAGCTGAAGCAGGAGCACAGACATGCCCTGAGTATTCGAGAAGAGATCACCAGAGATGCTGCCACAACCCAGAAACAACTTGAAGAGAAATCTAAGGATCTGAATAAACTCAAGGAAGATGTTGCACACTCAACAGTTCAGCTAGAGAAAATTAGAAAGGAGGTAGAAGATGCTCGGCGAGAGCGGGATGACTTagtgaagcagcagcagcaccaaaAGGCTGTGATGCAGGACAAAATCCAGAGGAGACAACAAAGAATAGACAAACTGGAGCAGCAGCTGCAGGAGATTGAGGCATCTGTGGAAAAGAAAGAGATGCAATTTGAGCAACAGAAGGAGcgCCTGATGATCCAACAGCAGCAGAGTTTAGAGTTGGAGGAGCTACAGAGGCGGCAGCAGCAGAAGTTGCAGTCCCAGCTGCAGGCACTAGAGGAAGCTCTGTCAGAGcgagtggagaaaatggagaagaTCACAGTTGCTGTGGAGGAGCTAGAAGAGCAGAGACGCTTCCTATTGGCAGATCAGAAGCAGTGTGCTTtactgcaggacagagtaacacaGCTGGAGCAAGACCTGGCTGAGAGTGAGGCCAGGCTATGTGCCAGCACAGAAGAGCAAAGAGAAGCAAAGGAGGAACTTGAAACCTGCCGCTCTGACATCCAGATTCTTCAAGGGACTCTGGCCACCGAGAGGGAGCGTGCAGAGGCCCTGATAAGCTGCAGTCTCACTGACAGAGATAAACTACAGCAGGCTGAGCTGTGGAGTTGGGGAGAGGGGGAGAGTCACATGCGAGAGATTCAGGACACTGTGCGCTCCCTGAGGGCTGAAGTCCAAGCAGAGCTGGACAGTGGTTTGAAAGAGCTGGAGTTGCAGCCTGTGACCACTTCCGACATGGACAATGACGAGGAGCACCACACATCAGCTACACTGAATATGGGGAAAGCGGCCTACAGCACCAGAGATGAGCAGTGGCGAGGAGAAGTGCTGAGAGAGAAGCTGAGGCAACATGAAGATAATCTGAAGGCGCAGCTGCGCAGGTGCATGTTCTCTCAGCAGGAGGCACTGAGTCTGCGCAGGCAGCAGACAGAGGGAAGCATCCAGGGCCTGCGCAGACGAGTAGACAAGTTGGACCAGCTACTGACCAAGTCTGGCCATGATTTCCCTTACCTGAGTGACTGCAACGTCCTTCCCAAATATGTGTGTAAGTGAAAACTGGAGATACAGAGTCTTCCCTAATCCAGGCACTTTCTGTTCTGCtgataaaaagtgaaaagaaatgatGTTGTCTGTTTTGCTTGTCAGCTTAAAGGCCATTATTAAGGCTATTTATAACACTCAGAATGGGTAATGATGAAAAAGTAAGTGTAAGATTTAATGCTTTGAGTACATGAGGAGGGTAAATCTGAAGGTGCAAATATTCTGGATTTATTTAGGTTTACTACCTCAGGGCCAAAAAGAGTCATCGTTCCATTTTGCTTTAGACAGATTGTTTGAGTGTGAggtttatatgatttttttttaaagaatatttttaacattttttgataacgtttttggtaaaataaaataacgtGCCTCAATTCTGTGGTATGTGCGAGCGGTTTGAATCTGTAATGTACATTCAGTTCATCTTGGGTATTGAACCATGACTGGAGGTTTAAAGCCTTTTTACTATTTTGTACATACCTATGACAAAGTCCACTCCTTTtaccacaaaataaaatatttattacagcacttaaaattttatatacatcattgttattaaatatgacaattgtgtgcaataaaatattatttttgtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU414888 lncRNA downstream 60690 5730462 ~ 5730720 (-) True G350114
XR_004577085.1 lncRNA downstream 80936 5707923 ~ 5710474 (-) True LOC117595899
TU414864 lncRNA downstream 100641 5690361 ~ 5690769 (-) True G350090
TU414828 lncRNA downstream 131095 5660100 ~ 5660315 (-) True G350061
TU414825 lncRNA downstream 146338 5642441 ~ 5645072 (-) True G350058
XR_004577159.1 lncRNA upstream 99933 5938466 ~ 5941832 (-) True LOC117595975
TU415047 lncRNA upstream 102764 5941297 ~ 5941643 (-) False LOC117595975
TU415366 lncRNA upstream 470599 6309132 ~ 6310450 (-) True G350513
XR_003404315.2 lncRNA upstream 508130 6346663 ~ 6352343 (-) True LOC113542569
XR_004577094.1 lncRNA upstream 544571 6383104 ~ 6388571 (-) True LOC117595904
XM_034299056.1 mRNA downstream 212429 5575788 ~ 5578981 (-) False LOC117595919
XM_034299055.1 mRNA downstream 212429 5576620 ~ 5578981 (-) True LOC117595919
XM_026940063.2 mRNA downstream 259095 5524146 ~ 5532315 (-) True LOC113542489
XM_026939766.2 mRNA downstream 268129 5370568 ~ 5523281 (-) False LOC113542328
XM_026940113.2 mRNA upstream 1968 5840501 ~ 5865005 (-) True c5
XM_026940127.2 mRNA upstream 27305 5865838 ~ 5870388 (-) True prdm12b
XM_026940130.2 mRNA upstream 90618 5929151 ~ 5938345 (-) True surf4l
XM_034299317.1 mRNA upstream 104769 5943302 ~ 5953387 (-) True ciz1b
XM_026940114.2 mRNA upstream 220738 6059271 ~ 6120959 (-) False pappab
XR_004577106.1 other downstream 212429 5576620 ~ 5578981 (-) False LOC117595919
TU414705 other downstream 424400 5362282 ~ 5367010 (-) False LOC113542328
TU414706 other downstream 427128 5321513 ~ 5364282 (-) True G349951
TU414275 other downstream 1251579 4539283 ~ 4539831 (-) True G349584
XR_004577114.1 other downstream 2403680 3346155 ~ 3387730 (-) False trpm3
XR_004577154.1 other upstream 218448 6056981 ~ 6120959 (-) True pappab
XR_004577155.1 other upstream 218702 6057235 ~ 6120959 (-) False pappab
TU415368 other upstream 508362 6346895 ~ 6352372 (-) False LOC113542569
TU415778 other upstream 926381 6764914 ~ 6775149 (-) True G350867
XR_003403722.2 other upstream 1764726 7603259 ~ 7607466 (-) False card9

Expression Profile