RNA id: XR_004577155.1


Basic Information

Item Value
RNA id XR_004577155.1
length 5209
RNA type misc_RNA
GC content 0.52
exon number 23
gene id pappab
representative False

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 6056981 ~ 6120959 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTGTCTTGACAAGCTTTTGTTAGCCTAAAAAATACGAAGAGCCGAAGGAGCAGAGGATCTAGACGCGCTGTTTCTGGAGAGCACTGTTTTTACCTAatctattaaagaaaaaaatatatatacatatatacacctATATATAGGCTACATTTTATTTGCTCCACGTGAAAATGAAACTTTTGCCTTTTTCTACTTGGTTGCCGTGCCTCTTGGTGTTCAGCTTGTGTCTGGGCTGCGAGTGCGGCGCTCTGAGGCGGACGGGCAGGTCTAAGAGAGACTTGGTGCGCGCGAGGGAGGCTGTCGGAGTCTCTCCCGGAGCGTGCGGCACGCGGCTGCCGCGGGGCAAGCGCTCTGTGTCCGGAACGGAGCGGCGCGCGGGCCGCCTGCACGCGCGTTTCAGTCAGCCGGGAGAGAGCGCGAGCTCAGCGCTCCGCCGCAACAGTGTTTACTTCAGCGGCAGAGATCAACTGCGGCTTAAACCGAGCGTGGAGGTTCCGCGCGGTAATTTCACCCTGGAGATGTGGATAAAACCTGAGGGCGGTCAGCGCTCTCCAAGTGTGATCGCAGGGCTCTATGACAAATGCTTCTATGCATCCTGTGATCGAGGCTGGTTACTAGGCATCAGACCTGTTCAAGGAAACAGGGACCCTCGTTTCTTCTTCTCCCTCAAAACAGACCGAGCGCACAAGGTTACCACAGTCACCTCCAATGCTCCCTACTCCCCCAACCACTGGCACCATCTGGCTGTCACCTACAATGGCCTCCATATGAAGCTCTACCTGAATGGGGCTCAAGTGGCTGTAAGCCGAGAACAGTCTGGTGAGGTCTTTAGCCCCCTTACAAAAAAGTGCAAGGTGCTAATGATAGGTGGCAATGCTCTCAACCACAACTACAGAGGGACACTGGAGCACCTGAGCCTATGGAAAGAAGCCCTGGCCCAGCACAGAATCATCCAGTACATGCAGAGCCCTCAACATGAGTACCAAGATGACCTTTCCCAAGTTGTCATTTATGAGAACTTTGAAAATGCATCTCGGAAATGGCTGACAGTGAAAGATGGGAGCTTTCCCCAAATGGGGATTTCTGACCGTACATTGACAGCCGATCTTGGTGGCTCTGTGGAAACTGCACTGGTTCCTCCACCATGTGGACAGACAATCTGTGACAATGTGGAGGTAGTAACAAACTACAACCGCTTATGGACCTTTCGCAAGCCAAAGACGGTGCGTTACCGATTGGTGAACGTGTACGATGATGAAGGCCGGTGGCCAACGGTTACAGAGCACCAGATCAACCTCCAGCACCAGCATCTAAACAAAGCTTTCCGCATCTACAACATCACCTGGGAGCGCACTGTGCACAATGTCTACAACTCCTCCTTACGCAACCGCCTGGTTCTTGCTAACTGTGACATCAGCAAAGTAGGCGACGAAGAGTGTGACCCAGAATGcaaccacacactcactggtTTTGATGCAGGCTACTGCAGGAGGCAAACCATCAGCTGTCCTGAGCACAAAATAGGGAACAAAGTGTGTGATCCTGAGTGTAACTGGGATAATTTCAACTATGACCAGGGTGACTGCTGTGACCCAAACATCACTGATGTCACAAAAACCTGCTTTAATCCTGCATCACACTACAGGGCCTACTTGGATGTGAAGGAGTTGAAAGAGACTTTGCACCTGGATGGGTCCACACACCTTAACATCTTTTTTGCCAATGCCACTGATGAAGACCTAGCAGGCGAAGCCACATGGCCTTGGGATAAAGACACCTTAACACATTTAGGTGGGATCGTGCTGAATCCCTTGTTCTATGGCACAtttggccacacacacaccatgatccATGAGATTGGCCACAGCCTTGGACTGTACCATGTCTTCAGGGGGATTTCAGAAATAGAGTCATGCAATGATGCCTGTCTGGAGACAGAACCCTCATTAGAGACTGGGGACCTGTGTGCCGATACAAACCCCACACCAAAGTATAAATACTGCAGAGACCCGGAGCGTGGAAATGACACGTGTGGCCAGCGGCTCTTCAAGCACACACCATTTAGAAATTATATGAGTTATACTGATGACGTCTGCACGAATTCCTTTACAATGAACCAGGTGGCCCGGATGCACTGCTATTTAGATCTGATCTACCAGTCCTGGAGGGCTGAGAGTAAGCCAGCCCCAGTTCCTCTAGCTCCTCGAGTGATGGAGCAAGGGCAAGACTCCCTCATCCTAGAGTGGTTCCCTGCACTTACTGGTCATTACTTTGACAGAGAAGTGGGATCCTTATGTGACAGATGCACTGAAGGAAGAGTGTTCCTGCAATACGCCTCAAACTCGTCCTCCCCCAAACCCTGCGCTCCATCAGGACACTGGAGCCCGCGTGAGGCAGAGGGTTCACCAGATGTGGAGCAGGTGTGTGAACCCAGTGTGCGTACCTGGAGTCCCCATGCTGGCCTTGACTCCCGCAGTGTGGGCTCTGCTTCTTGCCCTCCACAAGGCTGCATGCTCCACCTGAACTTCACCTACCCACTTGTGCCAGATTCGCTCACTGTCTGGGTCACGTTCTTCTCAGCAGAAGAGAGTGACCTGGCTGCCATCCACAACATCCTGCTACTGACACTGAGCGGCAACAATGTGTCTCTGGGTCCACAGAGCATCTTCTGTGACATGCCACTGACACTGAAGCTGGCTGTGGACGAGGAAGTATACGGCGTTCAGTTCTTTACTATGGATCAGCACCTGGAGATCGATGCCACGCTGATGGCCTCCAAACCAGGGCATGTACTCTGTCAGCCTTGCCAACCCCTGCATTATAGGCTGATGCGGAACCCGCCTTTCAGTCATGCACCTCATGGGGTGGTGCTCATGGAGCCCATGAGGAGATTTATAGACAGAGACATAGAGTCTGGTGAGACGTACACCTACCATGTGCTGACTGTTTCCAAGACAGCAGAAAGTGAGCCATCTCCTCCTCTCATACATCAGCTGGGCTCACCATACTGTGGAGACGGACTCATCCAACAttatCTGGGAGAGCAGTGTGATGACATGAACTTTGCCAATGGAGATGGCTGTTCCAACCAGTGCAGAAAGGAAGCTTTGTTTAACTGTGTTGATGAGCCCAGTCTTTGCTACTTCTATGATGGTGATGGTCTTTGCGAGGACTTTGAGCGGGAGACGAGTGTGAGGGATTGTGGGCTCTACACACCCAGTGGTTTCCTGGACCAGTGGGCCACAGGGGTGGAGGTTTCCGACGAGCACAGGGTACACTGCCCTGCAGAGGTGGCTGCTGGGTATCCTGCCGTGACAAAGagCTGTCTGTCGAAGGTGTTTGACCTGTCTGATGGTGGGGTGTCCCAGTATGCCTGGTTTCCATGTGAGGAATCACAGCGGCACAGCTGGAATACTCAGTACAGGTTAAAGGCGCACTATTCCCACCCCATGGTAGCTGCTGCTGTGATTATTCACCTGGCTGCAGATGGGACCATCTACAGTGATCAGACGCAGAGCAATGTCACTGTCCAGCTGGTGGACACCAAGGAGCAGCTCCACAATCTTGGCGAATGGCGGCTGAGTTGCAGGAACAACCCTCTAGTGATCCCTGTGATTCATGACCTGAGCATGGCTTTCTACAGGACCAAGGCTATTGTGGTGAGCTTCCGCTCAGCTCTGGTGGCCATTTCTGGAGTGGGTCTGCGTTCCTTTCAGTATTTTGACCCCATCACAATTAGTGGCTGCCAAAGCAATGAGATCTACAACCCCATGGGCCAAAGTTGTGTGCATTACTCATGTGATGCCATTGACTGCCAGAAGCCTATGGTGCATAACGCTGGGATAAAGTGCAGCAGTCCGGGTTACTTCAACGGTGTCCGCTGTACAGTCACCTGCAATCGCGGATACACCCTCAAAATCCACAGAGATGACGAAATTATCAAAACACAGTCTGACTCTATGGCCACCCTCACTTGTGCCGATGGGAAGTGGAACAAACAGGTGTCCTGTGAGCCAGTGGACTGCGGACGCCCAGACAAGTACCATGTGCACCCGGCTAACTTCAGCTTCACTGAAGGCACCACCTATGGCAAGAAGTGCACTTTCCAGTGTTTGCACCCAGCGCACCTGATAGgcAGCAATAACGTGCTGACGTGTATGGAAGATGGCTTGTGGTCCTTTCCAGAGGCTATGTGTGAGCTGCGCTGTCCCATGCCTCCTTCCATCCCCAATGCCATCCTGCAAACCAAACGCTGCAATGCCAGTGGTCTCAAAGTCGGCTCTTTCTGCAAGTACAAGTGCAAGCCGGGCTACCATGTGCCTAGTGCTGACAACCCCAAAAGACGGTCGTTCACGCGACAGTGTACGGAGAACGGTACCTGGCAACTGGGCATGTGTGTACCAGTGACGTGCGAGCCGCCACCACCAGTCTTCCATGGCAGCTACCAGTGTACTAATGGCTTCCAGTTCAATAGCGAGTGCTGGCTGAGCTGTCCCGAGGCCGATCACATGACAACCTCCACCACTGTGATCCGCTGTAGAAAGGACGGGAACTGGACTGGCTCTTTCCAGCTCTGCCCCCAGCTAAAAGGCCAGTGTTCCCTCCCTCAGAACCTGAGCCCAGACATCAACCTCAGCTGCAGCAGGGGGCATGGCATCGGAGAGCAGTGTGAGCTGACGTGCAGAGATGCTGGTAGCATTGTGGTGCTCCTCCCCAGGAATATGACTGTGGATGCCTTAGTGAAGGACCACTGGAGAAACCCACCCAAAGTTAAGAGTATTGTATGTACAATTGTACTGAAGTGGTATCCAAGCCCAGAGATTCTCCACTGCATAAAGGGTTGTGAGCCTTTCATGGGAGATAACTACTGCGATGCCATCAACAACAGAGCGTTCTGTAACTATGATGGTGGAGACTGCTGTCATTCTACTGTCAAAACTAAAACGGTGATTCCATTCCCCATGTCTTGTGACACCCGAGAAGACTGTGCGTGTCGAGACCCCAATGCACAGGAGAACAATAAAGGGATTCGACACCGTACACTGGGCTGAGGCCGGGCCACTGGAGGTCCTCCTGGTACCTAACAGGggaaaaactgtaaaacaaaaaacctttCTCTCTCCATGCTGCTTACTAGAGGGCCATTCCACTCATGCTGTACCCTGACATGCCTGCCGATGAGCCCTTGCCTATGccaTGAAAACCTAC

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0009790 embryo development biological_process
GO:0016020 membrane cellular_component
GO:0008237 metallopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577159.1 lncRNA downstream 115403 5938466 ~ 5941832 (-) True LOC117595975
TU415047 lncRNA downstream 115592 5941297 ~ 5941643 (-) False LOC117595975
TU414888 lncRNA downstream 326515 5730462 ~ 5730720 (-) True G350114
XR_004577085.1 lncRNA downstream 346761 5707923 ~ 5710474 (-) True LOC117595899
TU414864 lncRNA downstream 366466 5690361 ~ 5690769 (-) True G350090
TU415366 lncRNA upstream 188173 6309132 ~ 6310450 (-) True G350513
XR_003404315.2 lncRNA upstream 225704 6346663 ~ 6352343 (-) True LOC113542569
XR_004577094.1 lncRNA upstream 262145 6383104 ~ 6388571 (-) True LOC117595904
TU415571 lncRNA upstream 573896 6694855 ~ 6695063 (-) True G350664
TU415621 lncRNA upstream 621434 6742393 ~ 6742602 (-) True G350714
XM_034299317.1 mRNA downstream 103848 5943302 ~ 5953387 (-) True ciz1b
XM_026940130.2 mRNA downstream 118890 5929151 ~ 5938345 (-) True surf4l
XM_026940127.2 mRNA downstream 186847 5865838 ~ 5870388 (-) True prdm12b
XM_026940113.2 mRNA downstream 192230 5840501 ~ 5865005 (-) True c5
XM_034299314.1 mRNA downstream 218702 5791410 ~ 5838533 (-) False cntrl
XM_034299318.1 mRNA upstream 39913 6160872 ~ 6161633 (-) True cmlc1
XM_026940128.2 mRNA upstream 43808 6164767 ~ 6172156 (-) True ak5l
XM_026940155.2 mRNA upstream 51345 6172304 ~ 6175635 (-) True gpsm1a
XM_034299371.1 mRNA upstream 97846 6218805 ~ 6230283 (-) True LOC113542600
XM_026939677.2 mRNA upstream 115161 6236120 ~ 6239812 (-) False fam78aa
XR_004577106.1 other downstream 478254 5576620 ~ 5578981 (-) False LOC117595919
TU414705 other downstream 690225 5362282 ~ 5367010 (-) False LOC113542328
TU414706 other downstream 692953 5321513 ~ 5364282 (-) True G349951
TU414275 other downstream 1517404 4539283 ~ 4539831 (-) True G349584
XR_004577114.1 other downstream 2669505 3346155 ~ 3387730 (-) False trpm3
TU415368 other upstream 225936 6346895 ~ 6352372 (-) False LOC113542569
TU415778 other upstream 643955 6764914 ~ 6775149 (-) True G350867
XR_003403722.2 other upstream 1482300 7603259 ~ 7607466 (-) False card9
TU417110 other upstream 2459941 8580900 ~ 8585926 (-) False malt1
XR_004577119.1 other upstream 2919847 9040806 ~ 9049408 (-) False LOC113536894

Expression Profile