RNA id: XM_026940127.2


Basic Information

Item Value
RNA id XM_026940127.2
length 2164
RNA type mRNA
GC content 0.49
exon number 5
gene id prdm12b
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 5865838 ~ 5870388 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagcacacaagGGGTGGGTCATTAATAACTAATTACCGCAGGTCAGAGCCTAACGCACATATAAAGCCCACGGGAGCCGCACAACAGCAACACTTCCAGCACTGCGCTCCGCCAGCACAGACCCACACACCGAGCTTAGACACAGAgctctcaaaaacaaacaaacaacaaaaaacagagatataggcaaattattattattattatttttaaatatcagacCTGCTGTGTAACTGATTTATTTCCAGATAAAGGACATTTTACAGTTAAGGGTGTTACATCACAGTGAGATTAGAAATCATGGGCTCCGTGTTGCCCGCTGAAGCGCTGGCCCTGAAGGCTGGATTTAAGCCGCACACACTGGCTCTGTCAGACATCATCACCTCCGACATCCTGCACAGCTTCCTGTACGGCCGCTGGAGGAACGCGCTGGGGGAACATCTGCTCGAGGACAAGAGCAGCGCCGCGGGACCCAAAACCGCCTTCACCGCCGAGGTGCTGGCGCAGTCGTTCTCCGGAGAGGTGCAGAAGCTGTCAAGCCTTGTGTTGCCCAGTGAGGTGATCATCGCACAGAGCTCCATCCCTGGTGAAGGTCTTGGCATCTTCTCCAAGACATGGATCAAGGCAGGCACTGAGATGGGACCCTTCACTGGCAGGATCATTGCACCTGAACACGTAGACCTCTTTAAGAACAACAACCTCATGTGGGAGGTTTTCAATGAGGATGGGACAGTGCGCTACTTCATCGATGCCAGTCAAGAGGATCATCGCAGCTGGATGACCTACATCAAATGTGCTCGGAATGAGCAAGAGCAGAACCTAGAGGTGGTGCAGATTGGAAGCAGCATATTCTACAAAGCAGTagagACAATACCACCAGATCAGGAACTGCTGGTATGGTATGGAAATTCCCACAACACATTTTTGGGTATTCCTGGGGTTCCTGGCATAGACGATGAGCATCAGAAGAAGCATAAAAATGACGATTTCCACGTATGTGACACGTCGTCGTCCGGCACGTCCCTGGGCACGGTAGGCCGCATGCGCTGCGTGATCTGCCACCGCGGCTTCAATTCACGCAGCAACCTGCGCTCACACATGCGCATCCACACACTCGACAAGCCCTTCGTCTGCCGCTTCTGCAACCGCAGGTTCAGTCAGTCATCCACGCTGCGCAACCACGTGCGCCTGCACACTGGCGAGCGCCCCTACAAGTGCCACGTGTGCCAGAGCGCCTACTCACAGCTGGCAGGCCTGCGTGCGCACCAGAAAAGCGCAAGGCACCGTCCTCCCAGCGCCGGGCCCGTGGTGGGGCTGCAGACCccctcacctcctcctcctcctcagatGGCAGCGGTGCCTCACCCGGCCTCGCTGGTGCACCACATCCCCACCATGGTGCTATGAGGTGTGAAAGTGTCCCTCTGCTTTCAAACTTTACAGCCGCGTAGAGCACATGGCGCTGTCTGAAGTTACACATCCTCTCAGTGGATGCTGTGTTGTTCAAGCTCCTGGCTGTGTGCTGGAGACTCGGTGTACTTGATGCACAGGGCTGAGGAGCTCAGGGTGTGACAGTACTGACATGAGCAACAGAGTGCGGTTTTGTACGTATATTGTGTTGAATGCTCAGAGGCACAAATAGCAGGGAGTTCTGAGTAGAAGCCTTGAGTCTACTGATATCTGTTATATGTGGCTCATCCATGAGCGAGCAATGTCAATGAGGTGGTCAGTCAAAGTGTGTAATCGGTTAATCTTTGCATGCAAAATTGTTACAGTGTAACAATAATAGccactttttttaataaaacctcaAAGAATGCACATGAGGCTGCTGTTGTGTATCAGTGAACATGGGGACAGGGCAGAAAGGAGTGCATTTCAAGCCTCACTGGCCCCACCTATTGACCTGCATGTCACCTCCAGTGAGTAAAGTTCAGGAGCACAAAATTGTAAATTATCTGTGTAAGGTTTGTAAagtaatgtgaaaataattttaaaatctacTTCTGCAACTTACTGAACAGTCActttatttgtgtatgtatgtaaaacataaataagaataattGGCTCTATTATATTATGTACTTTGTTTGCTGAAATAAACTCTTTGAATATTCACATTGTATTCTAATAAATGATTACTTAATCACTTTTagtataa

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K24255 PRDM12; PR domain zinc finger protein 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU414888 lncRNA downstream 135118 5730462 ~ 5730720 (-) True G350114
XR_004577085.1 lncRNA downstream 155364 5707923 ~ 5710474 (-) True LOC117595899
TU414864 lncRNA downstream 175069 5690361 ~ 5690769 (-) True G350090
TU414828 lncRNA downstream 205523 5660100 ~ 5660315 (-) True G350061
TU414825 lncRNA downstream 220766 5642441 ~ 5645072 (-) True G350058
XR_004577159.1 lncRNA upstream 68078 5938466 ~ 5941832 (-) True LOC117595975
TU415047 lncRNA upstream 70909 5941297 ~ 5941643 (-) False LOC117595975
TU415366 lncRNA upstream 438744 6309132 ~ 6310450 (-) True G350513
XR_003404315.2 lncRNA upstream 476275 6346663 ~ 6352343 (-) True LOC113542569
XR_004577094.1 lncRNA upstream 512716 6383104 ~ 6388571 (-) True LOC117595904
XM_026940113.2 mRNA downstream 833 5840501 ~ 5865005 (-) True c5
XM_034299313.1 mRNA downstream 27304 5791410 ~ 5838534 (-) False cntrl
XM_034299312.1 mRNA downstream 27304 5791410 ~ 5838534 (-) True cntrl
XM_026940110.2 mRNA downstream 27305 5791410 ~ 5838533 (-) False cntrl
XM_034299314.1 mRNA downstream 27305 5791410 ~ 5838533 (-) False cntrl
XM_026940130.2 mRNA upstream 58763 5929151 ~ 5938345 (-) True surf4l
XM_034299317.1 mRNA upstream 72914 5943302 ~ 5953387 (-) True ciz1b
XM_026940114.2 mRNA upstream 188883 6059271 ~ 6120959 (-) False pappab
XM_034299318.1 mRNA upstream 290484 6160872 ~ 6161633 (-) True cmlc1
XM_026940128.2 mRNA upstream 294379 6164767 ~ 6172156 (-) True ak5l
XR_004577106.1 other downstream 286857 5576620 ~ 5578981 (-) False LOC117595919
TU414705 other downstream 498828 5362282 ~ 5367010 (-) False LOC113542328
TU414706 other downstream 501556 5321513 ~ 5364282 (-) True G349951
TU414275 other downstream 1326007 4539283 ~ 4539831 (-) True G349584
XR_004577114.1 other downstream 2478108 3346155 ~ 3387730 (-) False trpm3
XR_004577154.1 other upstream 186593 6056981 ~ 6120959 (-) True pappab
XR_004577155.1 other upstream 186847 6057235 ~ 6120959 (-) False pappab
TU415368 other upstream 476507 6346895 ~ 6352372 (-) False LOC113542569
TU415778 other upstream 894526 6764914 ~ 6775149 (-) True G350867
XR_003403722.2 other upstream 1732871 7603259 ~ 7607466 (-) False card9

Expression Profile