RNA id: XM_026940155.2


Basic Information

Item Value
RNA id XM_026940155.2
length 1496
RNA type mRNA
GC content 0.44
exon number 3
gene id gpsm1a
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 6172304 ~ 6175635 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCATAGGAAAACTGGGTGTGTGAAAATGGCAAGTGCACCACGCTTTGCTGGATTATAAAGATCTCTTTTATCTcctattctgtttttctttttttaaattacggAAGAAGATAAGAAAGCTGGGAACCTCTGCTCAATAACAAACACGTTTGGGTGTCGGGCAAGaaagCCAAAGCCAGGGCTCCCCTAATGAGGAATCCCTCCTCACAGTCCTCTGTGATTATACAAGCAGCCACATGGAAAACCGGCGCTGTCAGCATCTTCCACAGCCCAATGGCCAGCCAGGAGAGGCCCCAGCTGGAGCCCGGTCTGAATGTGAGTCCCCACTGCTTTCCGGAGCCACCTCGCTCATCTCCCTCACCCAGACGGAGGAGCTCTTTGATCTGATAGCCAGCTCACAGAGCCGCCGACTAGACGACCAGAGGGCCAGTATAGGAGATCGGCTGGGTATCACGATAGCACAGAACAGCATTGGCCATCATTGTGAAGCCTGTAATCCACAGGAGCTTAGTGATGAATTCTTTAACATGCTCATAAAATATCAGtcctcCCGGATCAATGACCAGAGGTGCTCACTGCCTCCAGTTCCGGATCCAGATGAAGACTTTTTCAGTCTCATTCAAAGAGTACAGGCTAAACGAATGGATGAACAGCGAGTCTCCTTCCATCCTGATGAGGATGATGCCACAGACTCTGACCCCAAGTCCAAGCCAGCCAGTTAGAGACTGCAGCATGTAAGAGTGACTTCTGCTGCCATGTTTAAGTACTGACATTGATGAGCTCATCCTGGTAGAGAACTCTATACCAAAGTCTGGGCGGACTTTGGTGGAACTAGTTGAAGTCCCAACTTGGCCCAGATTTGTGGCATAAAGTCTGGAATACAGTTTCTCAATCCTAGAGCATCACTGCAAAAGCACATTTTAGTGTCTTCTCTCCTCCCAGCACACCTGAATGAACCCATTAACTCATTAACGGGTCCCTCATGTTCTAACATGGACAGTCTCATGAGTTTCaaaagagtgtgttacagtagaAAACATGCTCAATTGTATATGGAACAGGTACCTTAGAAAACACTTCTAGAAAACAGGCCTAAATATTATTAGACCATTAGACCACATTGTCTGAGGGAATGGGGAAAAAGAATCTGCTCTGCAAATATGTTTGTTCAGATTCCAGTTCAACAAGCCACCATGGAAAATgtcttaataatttttaatggTAATTCTACTAACTGTCAGTGTCACAGCAACTgtcacacattttcattttcaggtcAAGTGGAAAATAATGTCCCACCACACTCTGAATATGAATCTGTTGGGTCCGAGCAGATGGCAGTGATGTATTTAGCATATGGTAACCTATCATGGGACCTCTGGGTCATTTGGCTTCAATAAACTTATTcataagaaaattaataaagcaaaaaatagTAATTAACTACAGAAGGCACACTCCAATCCAAAAACTATTAAACTAAGCTTGAACGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577159.1 lncRNA downstream 230472 5938466 ~ 5941832 (-) True LOC117595975
TU415047 lncRNA downstream 230661 5941297 ~ 5941643 (-) False LOC117595975
TU414888 lncRNA downstream 441584 5730462 ~ 5730720 (-) True G350114
XR_004577085.1 lncRNA downstream 461830 5707923 ~ 5710474 (-) True LOC117595899
TU414864 lncRNA downstream 481535 5690361 ~ 5690769 (-) True G350090
TU415366 lncRNA upstream 133497 6309132 ~ 6310450 (-) True G350513
XR_003404315.2 lncRNA upstream 171028 6346663 ~ 6352343 (-) True LOC113542569
XR_004577094.1 lncRNA upstream 207469 6383104 ~ 6388571 (-) True LOC117595904
TU415571 lncRNA upstream 519220 6694855 ~ 6695063 (-) True G350664
TU415621 lncRNA upstream 566758 6742393 ~ 6742602 (-) True G350714
XM_026940128.2 mRNA downstream 148 6164767 ~ 6172156 (-) True ak5l
XM_034299318.1 mRNA downstream 10671 6160872 ~ 6161633 (-) True cmlc1
XM_026940114.2 mRNA downstream 51345 6059271 ~ 6120959 (-) False pappab
XM_034299317.1 mRNA downstream 218917 5943302 ~ 5953387 (-) True ciz1b
XM_026940130.2 mRNA downstream 233959 5929151 ~ 5938345 (-) True surf4l
XM_034299371.1 mRNA upstream 43170 6218805 ~ 6230283 (-) True LOC113542600
XM_026939677.2 mRNA upstream 60485 6236120 ~ 6239812 (-) False fam78aa
XM_026939676.2 mRNA upstream 60485 6236120 ~ 6239812 (-) True fam78aa
XM_034299211.1 mRNA upstream 75296 6250931 ~ 6267587 (-) False brd3b
XM_026939939.2 mRNA upstream 75296 6250931 ~ 6267177 (-) False brd3b
XR_004577154.1 other downstream 51345 6056981 ~ 6120959 (-) True pappab
XR_004577155.1 other downstream 51345 6057235 ~ 6120959 (-) False pappab
XR_004577106.1 other downstream 593323 5576620 ~ 5578981 (-) False LOC117595919
TU414705 other downstream 805294 5362282 ~ 5367010 (-) False LOC113542328
TU414706 other downstream 808022 5321513 ~ 5364282 (-) True G349951
TU415368 other upstream 171260 6346895 ~ 6352372 (-) False LOC113542569
TU415778 other upstream 589279 6764914 ~ 6775149 (-) True G350867
XR_003403722.2 other upstream 1427624 7603259 ~ 7607466 (-) False card9
TU417110 other upstream 2405265 8580900 ~ 8585926 (-) False malt1
XR_004577119.1 other upstream 2865171 9040806 ~ 9049408 (-) False LOC113536894

Expression Profile