RNA id: XM_026940243.2


Basic Information

Item Value
RNA id XM_026940243.2
length 4297
RNA type mRNA
GC content 0.46
exon number 23
gene id LOC113542614
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 2435324 ~ 2458405 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACTGCTGCCAGTTTTCACAGTTTAATCTGCCTTTTGACTGTGGATGAGAAGCTAAAGAGCTAAAGAGCTAAATTCCTGTTTTAACCTGCACGAATGAATCAATCTGGCGATGCACGGTGCAGAAAGTGACGAGTCAGCAGTACAAGTGCCGAGACACGATCTGCTATTCTAACAGCCTGAAGATGGCTGAAAGAAACTCGGCACAAAGaaaacttaaagttacagatttacctcagcactgaaactggagactccttccaataaAAGTCGCGGTGGAtcccggagcctatcccgggaagaCGGGGCATGAGTTGGGAATATACCATGGATGGgatctgtcagagctgctgctatagaaaatgaatcaacaccttctgaccaatcagatcagcGCTGTGAGATAAACCTCACTATGAATTGtgatatttatgaataatataaaAGGTAAGTGTGAGCAATACAAGTCTGGTGTGGGGGTTTAGGAGTTAAGGAGATAAGTGTACAGGAATCTGCACATTCTACCTACTTCCCTAAGTTGCAGAACCATTCATCTGAAAGCTCAACTCTTCACCGTGAAATATGACAGGAAGATCAAACAACAGGTTTGACCTTGTAGACCGGGGAGGGCTGGCTTTTATTGTAACGCAATCATTGCACGAAGGAGTGGCGTTTGTGTTTACGCTGAACACGGCAGCTCTCATGTGGTGCACTTCGTCACAGCATGCCTGCACTTCTCGTTGCCTCTGAGGCGTGCTTGAACACAGCCGAAACTCTCTTCCTCACTTCCTTAAAGACTGAGTGCTCGAGTCAGGGGGGAGGCGGAGCTGGACGGACTCAGCCCAGGTGATCCATAAGGCCGAGTTCAGGCAGCTCTCGGCTTTCAGTAGGTGTCTACAGCTTGACAAATGGCAACCACCCGCTTTCTAGCATGGGTCCTCGTCCTCTCTGTGACATCCGTCCCATCAGGTTGTTTTACACTAAACGGAGTGAAGGTCTATGAGGTGGTTCAGCCAATCCGACTGCATGACCTTCATAAGAGAGATTTAGAGCCCAGCAGACCTGCATCGGTGAAATATGCCATGACTCTGGGTGGAAAACCCATCGAAATGCATCTAGAGAGAAACGATGGGTTTTTAACTGAAGACTACACTGAAACGTATTACACAGACGACGGGACTCCTGTGATAACCAAACCCCATGAGTTGGATCTCTGCTACTATCATGGGAAGATCGTGAACGACAACAACTCGATGGTTAGCGTGAGCACGTGTGACGGGTTACGAGGTTACTTCCAAACGGCAGAGCAGAGGTATCTCATCGAGCCCTTGTCCGAGGACGGCAACGGCGATCACGCGGTGCTGAAGTACGAGGAAGTGACCGACACTCCAATGGTGTGTGGTGTCACAAATACCACGTGGGAGCCTGCCGATCTTCCCCCTTACACCAGCAAGTCCAAATCACGCTCTTCCGGGCCAACAATGTTCCAGCAACAAAAGTACAATGAAATCATCCTTGTGGTGGATAATAGAATGTACAAGAAGATGGACAGTGACATCAACAAAGTGAGAAAGAGGATCTTTGAGATCGTCAACTTTGTTAATGCTGTGTACAAACCGATGAACACTTTTATCGCTCTGATCGGTCTGACAGCGTGGACAGACTCGGACAAGATCGCAGTGACGGCACCGGCTGGCGAGACGCTGGATAAATTTACCACGTGGAGGAATAATGAACTCATAAAGCAGAAGAAACATGACAACGCTCATCTGATCACTGGGATTGACTTGGATGGTTCGACAGTGGGACTGGCGTTTATTGGCACTCTGTGCTCGGGTCATTCTACCGGCATCATCCAGGACCATAATCCACGTGCCATAGCTGTAGGTGCCACCTTGGCCCATGAGATGGGACATAACCTGGGTATGAACCATGACACCAGCTCGTGTGTGTGCACCGAGGCCAGCTGCATCATGACTGCTGCTCTCAgCTACAACATCCCGCAACTTTTCAGTAGCTGCAGCATCAGCCAGTATGAGCAGTACCTGAACTCGCGGAAACCTGAGTGTCTTCTCAACAAACCGCAAGCCAAAGACCTGGTCCAGCCTCCAGTTTGTGGCAACGGCTTCCGAGAGATTGGAGAGGAATGTGACTGCGGCTCTGTGAAGGAGTGCACAAACCCATGCTGCAACGCCACCTCATGTACGCTGACAAAGGGGTCCACGTGCGCAGAAGGAGAGTGCTGTAATGACTGTAAGATCGCTGATGCCACCCAGATGTGTCGTGCCAAACAGAGTGAGTGTGACCTCCCTGAATATTGCACGGGTGATTCAAGCTCATGCCCTGAAGACGTCTTTGCTGTGAATGGACTGCCGTGCAAGAATGGCGATGGCTACTGCTACAACGGGCAGTGTCCTCGACGGGAAGACCAGTGCATCAAAATGTGGGGGTCAGATGCTGTAGTaggaagtgacttctgctacaATCAGAACACAAGGGGAATATACTATGCCTACTGTACACGGCCCACCAACGACCAGTATATAGGGTGCCAGAAACAGGATATCATGTGTGGGAAACTTTTCTGTGATAAAGGCCAGGCCGACCCAAACTATGGCCGGTTGGTCCAGTTCGTCAACTGCAAAGCTACTTTCTACGGTGACCGAGACAGTGACTTTGGCCAAGTGGACAGTGGAACAAAGTGTGGTGATGAAAAGGTGTGTAGTCAGAACCAGTGTGTCAGCTTAGAAGTTGCCTACAAGGCAACCAACTGCTCAGCCAAATGCAAAGGCCATGGGGTTTGTAATCACAAGCTGGAATGTAGCTGTGAACCTGGCTGGCTGCCACCCGACTGTGACAGGGCCATCAGCACTGGAATATCTACAGgtGCATATATAGGCATCGCAGTAGCAGTCTGCATCATGTTGGGGGCCATTTTAATTGTACTGGGCATATATTTCCTGAGACGTAGAAAGAGTCATCCACGTCTAACTGGTGTTCAGATCCAAGTGAAAGACTCTGTAAGCAACaattactcaaaccagccaaGAATGAACCTTCCTCCTCAGATCCCACCCACGGCAATCCGCCCTAAAGCCCCTCCGCCACCACCTCCGACTAAGCCGTCTGCCCCACCCTTGACCCTGCATACAGACTTCAGAGCGGCACAAAAGGCTCTTAgaccacctccacctccaccaaaagtgtaagaaaaaaaaaaaaaacggaccCATTTGGGATGGTTATATGGAACAAATCCAGCACCGagtatgatttatttttcacaagCTCATGAGAACCTGAAAAGAACTGATTAAGCAAAACGATTGGCTAGTTCCTGGAGATCTGCCTTACACCTTATCCAGCTAAACAATGGTCAGAAAATCCTCCACTTCCTGGATCGGGGAGTGTTGGAGCTAAACTTTGTAGGATAGCAGATCTCCAAGAGCAGGGTCTTGGTTGCACCCTCTAGAGGCCAACACAGGAAGCCCAAATCCATGTTACTGAAATCTGACATCTTGCACCTTGGTTTTATACCTAAAGGCTTGTTAAAATTAGAGAAACAGACGAACTAGTTTTAACTGATTGTGTTCCAGGAATATTTTGGAGCAATTTTGCCACTGACACTAATCCCAAATTCACGCCGGATGAGTCGCTTGCATCAAACGTCATTGTCAAGACCTGGGACAATTCACAAATAACACGCCTTAGTATTCCTCTTCTTGGAACTTCAGCAATCGGTTATCATTTATCAGTTATGAGTAGGTCATATCCGGcaatttttctttgtcttaagAGACTGTTTAATGTATAATGATTAATAGTTTAAGAGCTACCAGAATCTCTCTTCATTACAAAGCCTACTTTGTCTATAGAATAAGTCTGACATGCCTCCAATGCACTTCTATCATGACCATCGAACCACTTCTTAAAATGGAGCTGAACAAGGTTTTGACGCGACATGTCTGGTGTGAATTGCCAATCAGTCTCTGAAACTGAACTCAGGGCAAACAAAACCACTTTTAACAGCACAATAGCCTCCATCATTTCttgtaaatacataataaacaaattatttattttcctactAGAGTGCCAGGAGTGTCAATGTGAGTCACTGTAGATGTtctatgatatactgtatgtgtgcaatAAATGGAGctgtattcagatttttttttttttacaatttactAAGAAAAACATAGCATTAACTAAAGCACTTACGTAATAAAAACTTTCATATTTTGCTGCCTAATGACGTCAATCctttctaaataaaatgtatattacaAAGCAA

Function

GO: NA

KEGG:

id description
K08614 ADAM28; disintegrin and metalloproteinase domain-containing protein 28

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412742 lncRNA downstream 10993 2423715 ~ 2424331 (-) True G348283
TU412719 lncRNA downstream 33831 2400857 ~ 2401493 (-) True G348264
TU412721 lncRNA downstream 33831 2401033 ~ 2401493 (-) False G348264
TU412672 lncRNA downstream 126720 2306125 ~ 2308604 (-) True G348233
XR_004577113.1 lncRNA downstream 192508 2242208 ~ 2242816 (-) True LOC117595926
TU412771 lncRNA upstream 87010 2545415 ~ 2546515 (-) True G348309
TU412772 lncRNA upstream 88167 2546572 ~ 2548040 (-) True G348310
TU412773 lncRNA upstream 89718 2548123 ~ 2549010 (-) True G348311
TU412758 lncRNA upstream 90692 2549097 ~ 2594323 (-) True G348296
TU412967 lncRNA upstream 315317 2773722 ~ 2801204 (-) False LOC113542231
XM_026940273.2 mRNA downstream 72169 2357271 ~ 2363155 (-) True ogfod2
XM_034299099.1 mRNA downstream 152331 2252981 ~ 2282993 (-) False tacr1a
XM_026939880.2 mRNA downstream 152332 2252981 ~ 2282992 (-) True tacr1a
XM_034299412.1 mRNA downstream 225583 2201716 ~ 2209741 (-) False ncaph
XM_034299411.1 mRNA downstream 225583 2201716 ~ 2209741 (-) True ncaph
XM_026940065.2 mRNA upstream 7167 2465572 ~ 2482183 (-) True LOC113542490
XM_026939656.2 mRNA upstream 143129 2601534 ~ 2664482 (-) True zmat4a
XM_026939548.2 mRNA upstream 242592 2700997 ~ 2712386 (-) True sfrp1a
XM_034299212.1 mRNA upstream 287742 2746147 ~ 2773403 (-) True loxl2b
XM_026939603.2 mRNA upstream 322582 2780987 ~ 2782082 (-) False LOC113542231
TU412645 other downstream 203757 2179543 ~ 2231567 (-) False LOC113542580
TU412644 other downstream 249380 2179543 ~ 2185944 (-) False LOC113542580
TU412577 other downstream 436854 1995902 ~ 1998470 (-) True G348145
TU412500 other downstream 606679 1827898 ~ 1828645 (-) True G348096
trnak-uuu_19 other downstream 836782 1598470 ~ 1598542 (-) True trnak-uuu_19
TU412757 other upstream 179350 2637755 ~ 2664375 (-) False zmat4a
TU412979 other upstream 326272 2784677 ~ 2785896 (-) True G348491
XR_004577129.1 other upstream 356453 2814858 ~ 2964889 (-) False unc5db
XR_003404311.2 other upstream 697637 3156042 ~ 3166254 (-) False tm2d2
XR_004577114.1 other upstream 887750 3346155 ~ 3387730 (-) False trpm3

Expression Profile