RNA id: XM_034298967.1


Basic Information

Item Value
RNA id XM_034298967.1
length 2573
RNA type mRNA
GC content 0.40
exon number 6
gene id LOC117595912
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 126990 ~ 134539 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAGTGACTCGCTGTCAGGTGATTTAAAGTCCCcaacaaacccaaacaaacaaagacgAGGCTCAGCAGTGTTCAGCAGCAGTCTGGGATTAATGTAGCTTTTATTCCGCtgatactcagtgtgtgtgtgcttgtggaTTTATTCTGCACTTCAGGGGTTTTGTTTCTCCTCATCAGTGTGAAATGATTCTTATCTGGAGACATGAGGAGCTACAAGATCCACGTGTTCCTGTTCAGGTGTCTGATCTTAGCCACTATTGACTCTGTGTCAGCTGGACACTTTGTAAAGACCAGATGTAATGAGTTGGCTACTCTGCCCTGTAAACGGAAATGTTCTGGTTTGGTCAAATGGGTCAAGACCCACAGTCGAGATGATGTCATCGCTCAGTGTGATCAGACATCCTGCAGCTCAGAGGAGGGGTATGAAATGTCTCATGATCAGTACCTGAAGGGAGATCTGTCTCTCACCATCACTGCAGCTGATTACAGTAAGAGATCCTGGTACACGTGTCAGTGTGAGGGTAAGGACGTCTGTGATGTGCGCCTCAGCATGGAGCGCGTTAACTTTATCAGAGAGTTCGATCCTGGAGATTCCCTCACTGTGGATTTGCCGATCTCGGAGAGAGTGAAGATCACGTTTAACAGGAGCGGTGATGATGGAACTCAGAGCTCTGTTACACTCTGTACAGTCGAGGGACGTAAAGTTCACTGTAACCCTGAATATGAGAAGAGAACATCGTTCCAGTCCTCACTTACTCTGAGTGATTTAAAGCTGAGTGACGGcggtgtgtacactgtgtgggacactgagaaTGATGAGATCatagctacacacacactcagtgttacAGGAAAGATCAGAACCAAGTCTGTAGAAGGTGAACAGGTACCCAGCTGGGTTGTTGGACTCTGTTGGTTCTGTCTGGGTTTGGTGCTTGGCATTTTCCTGCATTGTTTTGTCCTTCCATCGATATTAAACTGCTGTGATCGGGACAAGAAGAAAAGGGCAAAGAATTCAGAGCGTGATTGCAGCACTGCGGAGAAGAATGATGATTCCACTGAAATCATCCagctgaactctgtgtgtgttgagagtCTCTAATGGATaatcatctattttttttttactttttacattcaTCATTTAGTGATGTATTAGTGTTATGTACAACCTGCGTAGCTTTACTGACTTCCATGTACAGGTTTCATTTACTGGAATATTTCTGTATAAGTGAGGATGTTTGAGAGGAGAGACATAAGCacatctgctaaatgctctTAATGCAGCTTTTATAAGCAACTTGAGAAAACCAGCCTGCAGTTAGACGAGTGTTAACATTATACTCTACTCAGATTCACTCTGCTCTGATACGATGCTCAGAGTCACATAAAAACCAGCAGAATGACACGTGAGAGGAGGAGAATCAGTTCAACCTTTCAAACATTCATCTTTTAGTTTTTCATACTGCATCATTTCACACTTACTCTACTGTGACACAGAATGTGTTgccttttaaaaagaaaaaacaacaatatttcAGTGTTCAGGTTGGAGTTTATCTCTCCAGCCCCTGCATCCTCCATCCTTTTCCTTCAACATGTTCTTCACTGAGCTTGACGTGTTTCCACCAGTTTCACCACGTTATTAACTAATTGGTTGATttgaatttataaatgtgtgatgtgtgtattgttaCAGTTGGGCTGCCAAAGTTTTAGTTAGTAAAATGCTAACTGTCTAATAAACATGGAAAATAATTAGCTCCAGCAGCTGGAGCTGAAGCGTTAAAGCTTTCTTTATCATCATGttgtaaaagtacaaaaattcAGCTGAGAAATGTGTCTATGATAAATgtagttgtttattatttgtgtacATTAAGCTCTGCTTAGTTTTTGTACACATTGTAAAGCACTGTTCTCATTTGTTCTGTATATAATTGTTAACTCtctatattactattatttctattagtagtaataatattacTGCATTTTGTCTTCACATGTTACCTTtgtaaggatttttttaatgaaaatgtgttttttactCTGCTGAGCTCTGAGAGCTGCTTATCTACTGATGTACAGTCACTTGAATAGACACTGCAAATGTACTGAATGTGAAAATGTCTTGTTGGTTTGGATcttttgtagttttatatttttgatggCACTGCAGATCCACGTGAGGAGTAGAAAAACCTCATTCAGAAGCTTCTAGAGgttttaatatacatatattatatatatatataaaatttatgcTCTTAATGTAACAGTATAATATATGACTATTGCATTGTTTTAATGAGAATGATtaaatcagggttgccagatttcagcAGAAAGctcaggactgtgtgtgtgtagtaactGTGtacctgatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagactacagTCTCTTTATCACGTCAGTACTCAGCTACATTCTGTCTTCTGTCCTGTGCTTTGTGTCCAAACACATTATCCAGcttactgttttcttttattaaaataaaaataaaaccatgagAAACCTGA

Function

GO:

id name namespace
GO:0000904 cell morphogenesis involved in differentiation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411870 lncRNA downstream 92212 17440 ~ 34778 (-) True G347634
TU411860 lncRNA upstream 4675 139214 ~ 141057 (-) False LOC117595978
TU411853 lncRNA upstream 40484 175023 ~ 206293 (-) True G347623
TU411951 lncRNA upstream 194375 328914 ~ 329608 (-) True G347703
TU411952 lncRNA upstream 198703 333242 ~ 333755 (-) True G347704
TU411911 lncRNA upstream 219788 354327 ~ 355340 (-) True G347672
XM_034298968.1 mRNA downstream 4329 119182 ~ 122661 (-) True LOC117595913
XM_034298969.1 mRNA downstream 10485 95456 ~ 116505 (-) True LOC117595914
XM_034298970.1 mRNA downstream 35121 86459 ~ 91869 (-) True LOC113525747
XM_034298972.1 mRNA downstream 46640 73680 ~ 80350 (-) True LOC113524950
XM_034299331.1 mRNA downstream 55506 61601 ~ 71484 (-) False paip1
XM_034298966.1 mRNA upstream 26481 161020 ~ 184542 (-) True LOC113528268
XM_034298965.1 mRNA upstream 40777 175316 ~ 184551 (-) False LOC113528268
XM_034298964.1 mRNA upstream 40777 175316 ~ 184549 (-) False LOC113528268
XM_034298963.1 mRNA upstream 58010 192549 ~ 201990 (-) True LOC117595911
XM_026916720.2 mRNA upstream 70941 205480 ~ 210705 (-) False LOC113528266
TU411864 other downstream 1784 87567 ~ 125206 (-) True G347628
TU411852 other downstream 5879 95363 ~ 121111 (-) True G347622
TU411851 other downstream 27328 86663 ~ 99662 (-) True G347621
TU411899 other upstream 62853 197392 ~ 201961 (-) False LOC117595911
TU411849 other upstream 71954 206493 ~ 210642 (-) False LOC113528266
TU411850 other upstream 71954 206493 ~ 210642 (-) False LOC113528266
XR_004577111.1 other upstream 95986 230525 ~ 237272 (-) False LOC117595925
XR_004577112.1 other upstream 95986 230525 ~ 236364 (-) True LOC117595925

Expression Profile