RNA id: XM_034298969.1


Basic Information

Item Value
RNA id XM_034298969.1
length 1175
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC117595914
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 95456 ~ 116505 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGACGAGGCTCAGCAGTGTTCAGCAGCAGTCTGGCATTAATGTAGCTTTTATTCCGCtgatactcagtgtgtgtgtgcttgtggaTTTATTCTGCACTTCAGGGGTTTTGTTTCTCTTCATCGGTGTGAACTGTTTCTTATCCGGACATGTGGAGCTACACACTTCTGTTCGGGCTGCTCATTTTCACCATTGCTGCCACTGTGTCCGGTGAACGTTCTGTAACAGCCAAACTTCATCACCCTGCTACTCTCACCTGTGACTGGAAATGTCCTGGTTCACTCAAATGGGTTAAATTTCATAAACGAGGTAATATTCTGGCTCGGTGTGATCAAACATCATGCAGGTCAGAGGAGAGATTTAACATCTCTCATGATCAGTACCTGAAGGGGAATCCACATCTCACCATCACTGCAGCTGATTACAGTACGAGAGGTTTATACACGTGTCAGTGTGATGGCAAAGACGTCTGTGACGTGCGGCTCGTCATTGAGACTCAAGTGATGAGCCGTGAGATTACCCCAGGCGAGCCCATAGACGTGTACTTACCCCTCACTGACCTGGTGGAGGTGAGTTTTACTGCGAGTGATGCTGCACAACCATCAGACCTGCAGATCTGCACCGTGGACAATGAGAAGATACAGTGCAGTCCAGATTATAAAGAGAGAGCGTCTCGCTTCAACACTCTTCAGATTAAAGATGGACATGTCTCTGACAGTGGCAGCTACACAGTACGGGATATAGTGTACAATGAGATTATAGCCATCGTAAAGGTCCATGTGAGAGaagACCAGCCAGGTTCGGACATCAGGCAGGAGGGAGGTGTACCAGCGTGTGGGATTGtactgatgctgctgctgctgctggttgTAGCTGCGTTTGTGTTCCTGATGGTGATGTATGTGCGTCTGAGGAGAGAGAATCAGCAGCTCCGTGAGAAAGATGAAAGGAACGGACACGAGCTGCCCCTAATGAATGGAAATGCTAACCATGATCCAGGAGAAGAGCAGGACTGAGTACACACTGAGCTTACTGAACccacaaacactgaacactattctattataataaaatctttagaatagaatagaagagCTTTATTGTGCTGCACGATCATAGTGAAAGTAAGTTTGAATTTCCTGCTGTTACATGATGGAGAATATGTCAGTAATGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411870 lncRNA downstream 60678 17440 ~ 34778 (-) True G347634
TU411888 lncRNA upstream 3804 120309 ~ 138813 (-) True G347652
TU411860 lncRNA upstream 22709 139214 ~ 141057 (-) False LOC117595978
TU411853 lncRNA upstream 58518 175023 ~ 206293 (-) True G347623
TU411951 lncRNA upstream 212409 328914 ~ 329608 (-) True G347703
TU411952 lncRNA upstream 216737 333242 ~ 333755 (-) True G347704
XM_034298970.1 mRNA downstream 3587 86459 ~ 91869 (-) True LOC113525747
XM_034298972.1 mRNA downstream 15106 73680 ~ 80350 (-) True LOC113524950
XM_034299331.1 mRNA downstream 23972 61601 ~ 71484 (-) False paip1
XM_034299335.1 mRNA upstream 1693 118198 ~ 149806 (-) True LOC117595978
XM_034298968.1 mRNA upstream 2677 119182 ~ 122661 (-) True LOC117595913
XM_034298967.1 mRNA upstream 10485 126990 ~ 134539 (-) True LOC117595912
XM_034298966.1 mRNA upstream 44515 161020 ~ 184542 (-) True LOC113528268
XM_034298965.1 mRNA upstream 58811 175316 ~ 184551 (-) False LOC113528268
TU411899 other upstream 80887 197392 ~ 201961 (-) False LOC117595911
TU411849 other upstream 89988 206493 ~ 210642 (-) False LOC113528266
TU411850 other upstream 89988 206493 ~ 210642 (-) False LOC113528266
XR_004577111.1 other upstream 114020 230525 ~ 237272 (-) False LOC117595925
XR_004577112.1 other upstream 114020 230525 ~ 236364 (-) True LOC117595925

Expression Profile