RNA id: XM_034298970.1


Basic Information

Item Value
RNA id XM_034298970.1
length 1191
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC113525747
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 86459 ~ 91869 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGtagttgtgttttaaaaaaacaaaaccagacGAGGCTCAGTGTTGAACAGGAAATCGAGTTGAATctgcagctgaacacacactttaGATCCTCACTCTCTCTAACTCAAACACAGCTTTCCTCCTCTCAGCCATGTGAGCTTCAGCAGGAGTCTGGGATTAATGTAGCTTTTATTCCGCtgatactcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcttgtggaTTTATTGTGCACTTCAGGGGATTGTTTCTGTCTGTGAGAGTAAAGTGGATGTTGTTTCTCTTTAAGaCATGTGGAGCTACACACTTCTGTTCGGGCTGCAGATTTTCACCTTTGCTGCCACTGTGTCTGGTGAACGTTCTGTAACAGCCAAACTTCATCACCCTGCTACTCTCACCTGTGACTGGAAATGTCCTGGTTTGCTCAAATGGAGTTTCAAGTTTCATACGATTGTGGCTCGGTGTGATCAGACATCATGCAGGTCAGAGGAGAGATTTAACATCTCTCATGATCAGTACCTGAAGGGGAATCCACATCTCACCATCACTGCAGCTGATTACAGTACGAGAGGTTTATACACGTGTCAGTGTGATGGCAAAGACGTCTGTGACGTGCGGCTCGTCATTGAGACTCAAGTGATGAGCCGTGAGATTACCCCAGGCGAGCCCATAAACGTGTACTTACCCCTCACTGACCGGGTGGAGGTGAGTTTTACTGCGAGTGATGCTGCACAACCATCAGACCTGCAGATCTGCACCGTGGACAACGAGAAGATACAGTGCAGTCCAGATTATAAAGAGAGAGCATCTCGCTTCAACACTCTTCAGATTAAAGCTGGAAACGTCTCTGACAGTGGCAGCTACACAGTACGGGATGTAGTGAATGATGAGACTTTAGCCATCTTAAAGGTCCATATGAGAGaagACCAGCCAGGTTCGGACATCAGGCAGGAGGGAGGTGTACCAGCGTGTGGGATTGtactgatgctgctgctgctgcttgtaGCTGCGTTTGTGTTCCTGATGGTGATGTATGTGCGTCTGAGGAGAGAGAATCAGCAGCTCCGTGAGAAAGATGAAAGGAACGGACACGAGCTGCCCCTAATGAATGGAAATGCTAACCATGATCCAGGAGAAGAGCAGAACTGAGTACACACTGAGCTTACTGAACccacaaacactg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411870 lncRNA downstream 51681 17440 ~ 34778 (-) True G347634
TU411888 lncRNA upstream 28440 120309 ~ 138813 (-) True G347652
TU411860 lncRNA upstream 47345 139214 ~ 141057 (-) False LOC117595978
TU411853 lncRNA upstream 83154 175023 ~ 206293 (-) True G347623
TU411951 lncRNA upstream 237045 328914 ~ 329608 (-) True G347703
TU411952 lncRNA upstream 241373 333242 ~ 333755 (-) True G347704
XM_034298972.1 mRNA downstream 6109 73680 ~ 80350 (-) True LOC113524950
XM_034299331.1 mRNA downstream 14975 61601 ~ 71484 (-) False paip1
XM_034298969.1 mRNA upstream 3587 95456 ~ 116505 (-) True LOC117595914
XM_034299335.1 mRNA upstream 26329 118198 ~ 149806 (-) True LOC117595978
XM_034298968.1 mRNA upstream 27313 119182 ~ 122661 (-) True LOC117595913
XM_034298967.1 mRNA upstream 35121 126990 ~ 134539 (-) True LOC117595912
XM_034298966.1 mRNA upstream 69151 161020 ~ 184542 (-) True LOC113528268
TU411852 other upstream 3494 95363 ~ 121111 (-) True G347622
TU411899 other upstream 105523 197392 ~ 201961 (-) False LOC117595911
TU411849 other upstream 114624 206493 ~ 210642 (-) False LOC113528266
TU411850 other upstream 114624 206493 ~ 210642 (-) False LOC113528266
XR_004577111.1 other upstream 138656 230525 ~ 237272 (-) False LOC117595925

Expression Profile