RNA id: XM_034298972.1



Basic Information


Item Value
RNA id XM_034298972.1
length 1547
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC113524950
representative True

Chromosome Information


Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 73680 ~ 80350 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


GCACTCCTCTGTCTCAAAGGCTGGAAGAGAGAAGAGCAGAGTGAAGAAGTGATTGTTTTCTCCCGaCATGTGGAGCTACACACTTCTGTTCGGGCTGCAGATTTTCACCTTTGCTGCCACTGTGTCTGGTGAACGTTCAGTAACAGCCAAACTTCATCACCCTGCTACTCTCACCTGTGACTGGAAATGTCCTGGTTCACTCAAATGGACCCTGTTTGATAAACCAGGTAGTGTTCTGGCTCAGTGTGATCAGACATCATGCAGGTCAGAGGAGAGATTTAACATCTCTCATGATCAGTACCTGAAGGGGAATCCACATCTCACCATCACTGCAGCTGATTACAGTACGAGAGGTTTATACACGTGTCAGTGTGATGGCAAAGACGTCTGTGACGTGCGGCTCGTCATTGAGACTCAAGTGATGAGCTGTGAGATTACCCCAGGCGAGCCCATAGACGTGTACTTACCCCTCACTGACCGGGTGGAGGTGAGTTTTACTGCGAGTGATGCTGCACAACCATCAGACCTGCAGATCTGCACCGTGGACAATGAGAAGATACAGATTATAAGTCCAGATTATAAAGAGAGAGCATCTCGCATCAACACTCTTCAGATTAAAGATGGAAATGTCTCTGACAGTGGCAGCTACACAGTACGGGATGTAGTGAACAATGAGACTTTAGCCATCTTAAAGGTCCATATGAGAGaaGACCAGCCAGGTTCGGACATCAGGCAGGAGGGAGGTGTACCAGCGTGTGGGATTGtactgatgctgctgctgctggttgTAGCTGCGTTTGTGTTCCTGATGGTGATGTATGTGCGTCTGAGGAGAGAGAATCAGCAGCTCCGTGAAGAAAGATGAAAACAACGGACACGAGCTGCGTCCAATGACTGGAAATGCTAACCATGATCCAGGAGAAGAGCAGGACTGAGTACACACTGAGCTTACTGAACCCACAAACACTGAGAGCAACAGAGAATAGGGGGAGAAAACCTGCTTCAGCTTTACCAAAAATACCTTCCTCAGGTGTTATTAGTGTTTATGTTAAATATGCAAAGTATTTTCACATGAAGGAGATCAGAGGAGACGCGAGACTTCGCTCTTCTTATAAAGTGTTTGTATGGATAAAGTTGTGAATGAAGCTGGATTTCAGTGAGCGCTCAGTCAGCTTATTCTTCAAACCATGttactgactctgaatacgagcCGAATCTCTGAAACGTCCACATTTAGAAAAGACTCTGTTTTATGTGATGGTGTTCTTTAGCTCCGCCTCCTCCATTAGCATCTGCTATCGTACACGTTGGTGAGTGTTAGCGTGTACACACCATATTCACAccatattcattaaaatgatgtaaatgattaTTAAGTGAAGCGGTTGTTTAAAGCAGTGCCATGGTTTTATATGAAATGTTtgtacatgttttattatgATGAAAGGCATCTAAATTTTAAAGctgaatatttgttttttactgcATTTGTGTAGACACATGTAATGTGTAACGTCACATGtaatattaaagtgtgtgtttctgga

Function


GO: NA

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU411870 lncRNA downstream 38902 17440 ~ 34778 (-) True G347634
TU411888 lncRNA upstream 39959 120309 ~ 138813 (-) True G347652
TU411860 lncRNA upstream 58864 139214 ~ 141057 (-) False LOC117595978
TU411853 lncRNA upstream 94673 175023 ~ 206293 (-) True G347623
TU411951 lncRNA upstream 248564 328914 ~ 329608 (-) True G347703
TU411952 lncRNA upstream 252892 333242 ~ 333755 (-) True G347704
XM_034299331.1 mRNA downstream 2196 61601 ~ 71484 (-) False paip1
XM_034298970.1 mRNA upstream 6109 86459 ~ 91869 (-) True LOC113525747
XM_034298969.1 mRNA upstream 15106 95456 ~ 116505 (-) True LOC117595914
XM_034299335.1 mRNA upstream 37848 118198 ~ 149806 (-) True LOC117595978
XM_034298968.1 mRNA upstream 38832 119182 ~ 122661 (-) True LOC117595913
XM_034298967.1 mRNA upstream 46640 126990 ~ 134539 (-) True LOC117595912
TU411851 other upstream 6313 86663 ~ 99662 (-) True G347621
TU411864 other upstream 7217 87567 ~ 125206 (-) True G347628
TU411852 other upstream 15013 95363 ~ 121111 (-) True G347622
TU411899 other upstream 117042 197392 ~ 201961 (-) False LOC117595911
TU411849 other upstream 126143 206493 ~ 210642 (-) False LOC113528266

Expression Profile


XM_034298972.1 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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XM_034298972.1 Expression in each Bioproject

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XM_034298972.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
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