RNA id: XM_034299046.1


Basic Information

Item Value
RNA id XM_034299046.1
length 2493
RNA type mRNA
GC content 0.39
exon number 1
gene id LOC117595918
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 6512434 ~ 6514926 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTagtattcattttcataatattcACCTCTGTTTTTAGCTCAGATCATTTTGCCACGTTTTTTGTATATTAGAGAACGATTAGAGATCGCTTTCTCATGTTGACGTGAGAACTAAGTTATCTTGAAAGCAAATAACGTTAGCTAGCATATAGATTACAAACGTTAATTGACACAAGTGAAACTAGCTAGCTGCTTATCAAATGTTTGTCCACAAAAGTATTGTGACGAGCGGCTCCAGTTGTGCACCACATGTACCTGACTCGGTATAGAGTTAAGTTAAGTTAACGTTAGCTGTAATTGGATTGCTGGAGGCCATTTTGATGTGCATTATGCCTATTCGAGGGTAATTGTTTCTGATAGGAATGTAAGGtattttcatcatttaacaTCACTGGGGCTAGTCGGAGATTTTATTGGCCTCTAAATCTATAATGTTGGTGTTTCAACATTCACTGTTTGAATCCTTTTTGACCACTGCGGAACACAGCTGTTGCTTCACTGTATTTGCATGCATTTGTAATATGTAcacttttattactgaaatgCTGGGAAGTATTTACAAGAACAATATTTCATCACCGCTCCACCTCAGTGAAAGGAGAAAGAGGGAAATAAACAGGTAAACATTAGAATTGAGCCGTTAAAGCAATACAATGTTAATATAATTTAGCCTACAATTAGactatatacataaaaaaaatataaaccaagCAACTTTATGTTTACCTTATGTAAATAAGAGGCTGCATTCTAACTTATTTCCactaattttcatattttaaaaatgacatccATCATTTTGAGttaaaaagaaattcatttCAATTGCGTGTCTATCTTCCTAGTTTTTAACAGATGTAAATAATCACTTAATAAATAGGATATTCATTTcctattaaattaaatcttattaaattaaaaatgaatttatttgtattattccAAGAATAGcctattacattattacacgtGAGCAGTGCGTTCCCTGGTTCGTAGGATCATAGAACTCACTCCTCCTCCGTGAATAAATCACCATCTGAATGCATGAGATTCATCACTGAGTGTTATtgctaggggtgtaacgattcattcattttctcgATGCATCGATTGCAGATCCTGCCGATGCATATGCATCGATCTTGAAACATGGATTTTTGAATCGTGAATCGATTGTTTCTCTCAATAAtcgatttaaaatgaaataatcgATTGAATCGCAATTATATAACGattcacaatattaaaaataaatgtaaaccaTAAATTAGTTGAGTCCGTGTAGTCACGTGCGCCCTCACTACAGTGGCGCGGTGGATTACATCACTACTCTCCAATTCATGCCCGTTTATTGTCATTTACACACACGCTGTACTATGGAGGGCAACGAAGGAGAAATTGTCAAGGCACCAGCCAATTTGAAGTCAAAGGTTTGGGAAAACTTtggtttttacaaaaaaaatgggaAGATTGACAAGTCCGTTGCAGTTTGCAGACATTGTAAATGTGAGTTAAAGTACTGCGGAAACACAACAAACCTTAGCAACCACCTCCGCAGACGCCATGCTATTAAGGTAGAAAAACCTTCCGAAGCTAGTATCTCAAGTTCAGGTTTGAGAACTCCTAACCTATTTGATGAGAGTCTTTCCGCGAACTCTCATCGTGCTAAAGCCATAACTGCATCTATCGCAAGATTTATGTGCAAAGATATGCGCCCCTATAGCATGGTGGAAAACACTGGTTTCCGAGAAATGATAAAAACTTTCGAACCAAGATACAAAATACCCAGCCGTCAGTTTTTCAGTGAAAAATATATCCCGGAGTTATATCAGTCTACGAAAGAGGAGCTGCAGCTCAAGCTTTCTCAGTCTGCCCGTGTCGCCCTCACCACTGATTCTTGGACGTCCTGTTCGACAGAATCTTACATGACAATCACCGCACATCTTATTTCCGTGAACTGGCAAATGCAGTGCTTCGTTCTTCAAACAAGGATTCTAAACGAAGCCCACACAGGCAAAAACATTGGAGAATTGCTGTGTGATGCCTGCTCTGAGTGGACAATTGCAAACAAGAGCCCTGCTCTTGTTACAGACAACGCCCGCAATATGATTGCTGCAGGTAAAGCTGCTGGATTTACCCCCCACATCACTTGCTTTGCACACACGCTTAACTTGGTGTCTCAAAAGGCCGTGAAAGTGAACAATGCAGAGCGATTGTTGGGCAAAGTTAGACAGATTGTCTCTTATTTCCACCGAAGTTCCACTGCTACATGCACTTTAAAAGAGAAACAACAACTTCTCGGCTTACCGTTACACTAAACTTAAACAGGACGTTTGCACTAGGTGGAACAGTTCTGTGGAAATGCTTAAGCGTTTCTTAGAACAACAAACCGCAATCTTGGCAACGCTTATGTCAAAGAATTTGCGGAGGGGAACGGAAGTCCACACGCTCTCTGAAACGGACATCAGTAATGCTGAGGACATTGTGAAAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577094.1 lncRNA downstream 123863 6383104 ~ 6388571 (-) True LOC117595904
XR_003404315.2 lncRNA downstream 160091 6346663 ~ 6352343 (-) True LOC113542569
TU415366 lncRNA downstream 201984 6309132 ~ 6310450 (-) True G350513
XR_004577159.1 lncRNA downstream 570602 5938466 ~ 5941832 (-) True LOC117595975
TU415571 lncRNA upstream 179929 6694855 ~ 6695063 (-) True G350664
TU415621 lncRNA upstream 227467 6742393 ~ 6742602 (-) True G350714
XR_004577103.1 lncRNA upstream 387367 6902293 ~ 6914343 (-) False LOC113537000
XR_004577105.1 lncRNA upstream 387367 6902293 ~ 6911806 (-) False LOC113537000
XR_004577104.1 lncRNA upstream 387367 6902293 ~ 6911565 (-) False LOC113537000
XM_026939987.2 mRNA downstream 19576 6488487 ~ 6492858 (-) False krt1-c5
XM_026939986.2 mRNA downstream 19576 6488487 ~ 6492858 (-) True krt1-c5
XM_026940249.2 mRNA downstream 33318 6476369 ~ 6479116 (-) False zbtb26
XM_034299048.1 mRNA upstream 19850 6534776 ~ 6537285 (-) True LOC113537042
XM_034299045.1 mRNA upstream 22313 6537239 ~ 6553884 (-) False LOC113537041
XM_034299043.1 mRNA upstream 22313 6537239 ~ 6553884 (-) False LOC113537041
XM_034299044.1 mRNA upstream 22382 6537308 ~ 6553884 (-) True LOC113537041
XM_026931208.2 mRNA upstream 422359 6937285 ~ 7104859 (-) True fam172a
TU415368 other downstream 160062 6346895 ~ 6352372 (-) False LOC113542569
XR_004577154.1 other downstream 391475 6056981 ~ 6120959 (-) True pappab
XR_004577155.1 other downstream 391475 6057235 ~ 6120959 (-) False pappab
XR_004577106.1 other downstream 933453 5576620 ~ 5578981 (-) False LOC117595919
TU414705 other downstream 1145424 5362282 ~ 5367010 (-) False LOC113542328
TU415778 other upstream 249988 6764914 ~ 6775149 (-) True G350867
XR_003403722.2 other upstream 1088333 7603259 ~ 7607466 (-) False card9
TU417110 other upstream 2065974 8580900 ~ 8585926 (-) False malt1
XR_004577119.1 other upstream 2525880 9040806 ~ 9049408 (-) False LOC113536894
XR_003403715.2 other upstream 3858503 10373429 ~ 10411686 (-) False iqgap2

Expression Profile