RNA id: XR_004577112.1


Basic Information

Item Value
RNA id XR_004577112.1
length 1387
RNA type misc_RNA
GC content 0.52
exon number 7
gene id LOC117595925
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 230525 ~ 237272 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTTCACACCCCTCACCAGGGTGTCTTCCTGCGTGCGATAAGGAGGATGAGTGGAAACGACGGAGGTGATCCGGGACGTTTGTGTACGCAGATGATGAACAATATTCTCTCTTCTAGAGCCGGGGTGATTTAGTTTAGCCCTACGTGTTCATGAATACATCACCTAACAAACGTGTGCTTAATTATCCACGCATGAATTCACGAGACTCGCGCCGTAGTGAAGGTTAGCTCTTCAGTACATCGTGATGTGAAGTGTTTCTCATAAAGaCATGAAGACCTACATGATGCTCGTGGTCCTGTTTGGGCTGATGATTGCTGCCAGCGTGTCCTCTTTGGCAGGCTTTAAGTCTACAGTAAGGAAGCTTCATCAGCCTGCTACTCTGTCCTGTGAAGGGAAATGTTCAGGTTCAGTGAAATGGACAAAGATCCAGAAGCCGAGGGGAGATGTAGTGGTGGCTCGGTGTGATCGGACGTCCTGCAGCTCCGAGGAGGGGTTTCTCGTCTCTCGTGATCAGTACCTGGAGGGGAATCTGTCTCTCACCATCACCGCAGCTGATTACAGTAGGCGTGGCTGGTACACGTGTCAGTGCGACGGCGAGGACGTCTGTTCCGTGAGTCTTCGCTTTGAGCCTGTGGAGCTGATGAAACAGATCTGTCCTGGAGATTCGCTTGTTATGGATGTTCGGATCCCTGAGCGAGCGGAGCTTGTGTTACGCAGGAGCGGTGATGATGGAGCTCGGAGCGCTGTCTCAGTTCCGCTCTGCAGCGTCGCTGGGCGGAATCTTCAGTGTGAGCCTGAATACGAGAAGAGAGTGGTGTTTAGTTGCTCGCTGACTCTGACCGCAGTGAAGGAGTCTGACAGCGGTGTGTACGCTGTGCGGGATGCTGATAACGACGAGAttatatcaacacacacactcacgctcaCGGGAAATAAGACAGATGTCAACAACACACTGCCTGCTAAAggTAAACAGGACAGCTGGAACATGAAGCACATATTCGAGGAGGAGTACAGAGGGGTCATCGTGGGACTGGTGCTGGGACTcgtgctgggtgtgtgtgtgttcggtgctgtgtgtagtgtagtgaaggGCTGCAGTTTCATCTGGAGGAAAGTGGAAAAGTGTTGGAGAGATGATCGTGATCACTTCTCACTGAATGGGAAGTTTAATCCTGTTGAAAGCATCAAACTGCGCGTGTGTGATTAATGCTCTGTAGGACAAGCTGTCGTATGTTTCCCGCTAGGAGCCGGGCATTAGCCACAATTACGTTTTACAGGGTCGCGCACACACAGagCGGGGTTACACTCGCACACACAGCGGGGTtacactcgcacacacagggctggtatacactcgcacacacagCGGGTTACACTCGCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU411853 lncRNA downstream 24232 175023 ~ 206293 (-) True G347623
TU411860 lncRNA downstream 89468 139214 ~ 141057 (-) False LOC117595978
TU411888 lncRNA downstream 91712 120309 ~ 138813 (-) True G347652
TU411870 lncRNA downstream 195747 17440 ~ 34778 (-) True G347634
TU411951 lncRNA upstream 92550 328914 ~ 329608 (-) True G347703
TU411952 lncRNA upstream 96878 333242 ~ 333755 (-) True G347704
TU411911 lncRNA upstream 117963 354327 ~ 355340 (-) True G347672
XR_004577162.1 lncRNA upstream 127901 364265 ~ 367739 (-) False LOC113528009
TU411979 lncRNA upstream 159003 395367 ~ 397450 (-) True G347723
XM_026916717.2 mRNA downstream 3821 221429 ~ 226704 (-) True LOC113528265
XM_026916718.2 mRNA downstream 4078 221429 ~ 226447 (-) False LOC113528265
XM_026916720.2 mRNA downstream 19820 205480 ~ 210705 (-) False LOC113528266
XM_026916719.2 mRNA downstream 19820 205480 ~ 210705 (-) True LOC113528266
XM_034298963.1 mRNA downstream 28535 192549 ~ 201990 (-) True LOC117595911
XM_034299336.1 mRNA upstream 2453 238817 ~ 254544 (-) True mybbp1a
XM_026916564.2 mRNA upstream 21163 257527 ~ 260223 (-) True fgf10b
XM_034299337.1 mRNA upstream 25275 261639 ~ 282406 (-) True adamts12
XM_034299121.1 mRNA upstream 137086 373450 ~ 385400 (-) True lrp13
XM_034299345.1 mRNA upstream 181943 418307 ~ 438443 (-) True rusc2
TU411849 other downstream 19883 206493 ~ 210642 (-) False LOC113528266
TU411850 other downstream 19883 206493 ~ 210642 (-) False LOC113528266
TU411899 other downstream 28564 197392 ~ 201961 (-) False LOC117595911
TU411864 other downstream 105319 87567 ~ 125206 (-) True G347628
TU411959 other upstream 127642 364006 ~ 367735 (-) True LOC113528009
XR_004577138.1 other upstream 627856 864220 ~ 924623 (-) False LOC113527995
TU412323 other upstream 840369 1076733 ~ 1079139 (-) True G347960
TU412226 other upstream 921427 1157791 ~ 1410675 (-) False G347896
TU412230 other upstream 921427 1157791 ~ 1297906 (-) False G347896

Expression Profile