RNA id: XM_034299102.1


Basic Information

Item Value
RNA id XM_034299102.1
length 6244
RNA type mRNA
GC content 0.46
exon number 20
gene id trpm3
representative False

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 3319785 ~ 3387730 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGAAATTACAACAGGTTTTGTCCTATGCTATGAGTCATTAATTGGTTAGCAGGCTATCTAGCTAACTCAGTGGTTCATATGGATTTTTCTTATGTAGCCAGATTATTGGCGTCTACCAGATGatCACAGTGTTTCGGATGGGTTCAGAGGGACACCAGGACATTGACCTGGCTATCCTCACAGCTTTACTAAAAggTGCCAATGCTTCAGCTCCTGATCAGCTGAGCCTGGCTTTGGCCTGGAACCGTGTGGACATTGCCCGTAGTCAGATATTCATCTATGGACAGCAATGGCCTGTGGGCTCTCTTGAGCAGGCCATGCTGGATGCCCTGGTGCTGGACCGTGTGGACTTTGTGAAGCTGTTGATTGAGAATGGCGTGAGCATGCACCGGTTCCTCACACTGTCCCGGCTAGAGGAGCTCTACAACACGAGGCATGGACCATCCAACACACTGTATCATCTCGTCCGGGATGTAAAAAAGCAAGAATATCCAGGGTTCAGTTGGATCTACCTCAAGGGCAACCTGCCACCTGACTACCGCATCAGCCTGATTGACATTGGATTGGTCATTGAATACCTAATGGGTGGAGCCTATCGATGCAACTACACACGGAAAAGATTCCGAACCCTCTACCACAACTTGTTTGGGCCAAAGAGGCCAAAGGCCCTGAAGCTGCTTGGAAtggagGATGACATGCCAATCCGACGAGGGCGGCAGAAGACAACAAGGAAaagagaggaggaggtggaCATTGATCTGGATGACCCTGAAATCAACCACTTCCCTTTCCCCTTCCATGAGCTGATGGTGTGGGCAGTGCTGATGAAGAGGCAGAAGATGGCACTGTTCTTCTGGCAGCATGGTGAGGAAGCCATGGCCAAGGCGTTGGTGGCATGCAAGCTGTGCAAGGCCATGGCTCATGAAGCCTCGGAGAATGACATGGTGGACGACATCTCTCAGGAGCTCAACCATAACTCCAGGGAGTTTGGCCAGCTGGCAGTGGAGCTCCTGGACCAGTCCTACAAGCAGGATGAGCAGATGGCCATGAAGCTGCTTACCTATGAGCTGAAGAACTGGAGCAATGCCACCTGCTTGCAGCTGGCTGTAGCCGCCAAGCATCGCGACTTCATCGCTCACACTTGCAGCCAAATGTTGCTCACTGACATGTGGATGGGGCGGCTTCGCATGCGCAAAAACTCTGGCCTCAAGGTAATCCTGGGCCTACTGCTGCCTCCCTCCATCCTGAGTCTGGAGTTTAAGAATAAGGATGAGATGTCGTACATGCCTCAGGAGCAGGAGGCCTACCTGCAGGAGAAGGATTCGGATGAGGCTGACAAGCCAGCCAAGGACAAGGAAGAGGAGGACATGGAGTTCACCGTAAGAGCATACTGTGAGGCGCAGTACAACTCCGTGGCTATGCTGGGGAATGTGAGCTCAGAAGTGTCTCGGAAAAAGGAAGTGGAGGAGGCCCAAAACCGCCATCGCCTAATTCCAGTGGGCCGCAAGATCTATGAGTTTTACAACGCCCCCATTGTCAAGTTCTGGTTCCATACGatgGCCTATGTGGGCTACCTAATGCTCTTCAACTACATTGTGCTGGTAAAAATGGACCTCTGGCCTTCTCCTCAGGAGTGGATCGTGATTGCCTACATTTTCACCAATGGCATTGAGAAGATGAGGGAGATCCTGATGTCAGAGCCTGGTAAACTGCTGCAGAAAGTTAAAGTATGGCTGCAGGAGTACTGGAACATCACGGACCTCATGGCTATCCTTATCTTCTCCATTGGCATGGTGCTCCGTCTCCAGGAGCCGCCACTCATGAGCTACGGTCGGGTCATCTACTGCGTCAACATCATCTACTGGTACATCCGCCTGCTTGACATCTTTGGGGTAAACAAATACCTCGGACCCTACGTAATGATGATTGGCAAGATGATGATAGATATGATGTATTTTGTGATCATCATGTTGGTGGTGCTGATGAGTTTCGGTGTGGCTCGTCAAGCCATCCTGAACCCTAATGAGGACCCATCATGGATGCTTGCTCGCAACATCTTCTTCATGCCCTACTGGATGATCTATGGCGAAGTCTTTGCTGACCAAATTGACCATGTGAATAGTAGGAAGCTACAGAACAGGCTGAATGAAAAACTCTGGCCGGTCGAAAATTACGTTCGATCTCAAGGAACTGGGCGTAACAGTGGTCCATCCCATATAGCACCATGTGGGCAGAACATCACCACAGAGGACGGTGCTATTGTGCCCCTGCCCCCGTGTAAGACCGGCGCGTGGATTGTGCCTGCCATCATGGCCTGCTACTTGCTGGTTGCCAACATTCTTCTGGTCAATCTCCTCATTGCTGTCTTCAACAATACGTTCTTCGAGGTGAAGTCCATCTCCAACCAGGTGTGGAAATTTCAGCGCTATCAGCTGATCATGACATTTCATGAGCGCCCTGTTCTTCCTCCTCCCCTCATAATCTTCAGTCATATGACCATGGTCCTCAAGCATCTGTGCTGTCGCTGGAGgaagcatgatgatgatgaacgaGACTTTGGATTAAAGCTCTTCATCACAGAAGACGAGCTGAAAAAAGTCCATGATTTTGAAGAGCAGTGCATCGAAGAATACTTCAGAGAAAAGGATGATCGCTTCAACTCTTCCAATGATGAGAGGATCCGAGTAACATCTGAAAGGGTGGAAAACATGGCAATGAGGCTGGAGGAGGTAAATGAGCGGGAGCACTTCATGAAGGCCTCACTGCAGACAGTGGACATTCGGCTGGCACAGATGGAAGAACTGATTGGCCGCATGACCGCGGCTCTGGAGCGGGTTACAGGTGTGGAGCGGACTGAGGTGAACAAGGCACGCTCGAGGACGTCGTCAGACTGCACTGACACTAACTATATCCTCCGTCAGAGCAGTTTCAACAGCCAGGAGGGCAACGCCTACCGGTTGCAAGAGTCTATGGAACAGGGTGGGGAGGAGTCCATTTCTCCGACCTCACCCACTGCACTGGCACCAAGGGTAAGGAGCCACTCTTTCTACATAGGCCATTCATCTCGAGACAGATGTGGGACTGACCGAGTTGAGGGTTTCTTCAAGGAGCGCTCTTTGAGCTTACACCGTGCCAACAGCTCACAGTCAGTTGCGTCAGGAGCTGCCCCGAAAGAGTGCAAACCTGCCCCTCTGAATACATTGTCTGTACAACAACAGCACCGACCCTCCTCTTGCATCGATATATATGTGTCCACAACGGAGGAGGCACAGCCCCAAGAGAGCTTCCTGGAACCAATTCGAATGGCTCAGACTCTTGCTCGAGACTCATCCCTCCATTCTGAAATCATGGAGGCAGTGCTGTCTGGGGAACGGGACTACCGTGGTAGGGCAGGGGTTAGTGAAAGACAGCCAGATGGCACTGTCTTATTTGAGGACAGTGCTGCCGCCGACCTGTCACTGTGCACCACCCACCTACCGCCAGATGCCCTGCCCCCGTGGGACACAGAGCCATCCCCTCCACCCTCAGCAGGCATCCTTGAGCGCTCCAAGAGCAGCCGCTTTTTATCAGCGGCTGGACCCTTGTTCTTGGATGAGGCACCAATGGTGAAGTCCCACAGCCTGATGTTCATGCCACGCAACTACTATGGTGGCATGGGCATGCAAGTAAAGGCAGCTGAGTACACCAGCATCACAGACTGCATTGACACACGCTGTGTCTCGACGTCATACTCAGTGCCCGAGCGCTCAGATTCACCTGGGGGCTCATTCACCTTTGAGAAGCCCCAGGAAGTGTGTGCCTCACACCCGGAGCGTGATGCTGAGCTGAGCCATGCTGAGTCTGACCCTGAGGAGCCCACCGAGGGCTCAGCTGAGACCAGCAAGCCCTGTTCCAGTGGAGGTGGTGTTATGGGGGTTGATTTGGCCCTGGGCTTAGCCCTGGGCCCCTTCTGTTCTCCAGCCTCCAGACTGGAACGAGCCAATAGCTGCTCCTCATCAGAGGACTCCCATTCCAATGTCTATGCCCGAAAGAgcttctccatcagtgaacGCATGGACAAGGGACGTGCCAGGAATCCATTCCAGAGGAGCAAGTCTGGTATGAGGCCTGACAGCAAGACAGACACACTATCCTTGAGGCGACTGGCCAAGCCGTCAGCCTTCCAAAGCTTTGATGGCAGGCACAACTACACGTGATGGTGGAGAAGATTAAGGAGAAAGGGCAGACAACATCATGGATCTAATGTAGTATGCCTAGGATGGAAAAGGAAGCTTACAACTTATTTGATGTCCAAAGGCCTGTCCATTAAGCAGTTAGCACTGTCTGGGTGAATTATGTGCTCTACATTGTAATGATCTGTCCTGGATAGCAAACTAGCACACTATGACACCTTTAGCACCATAGTACAAATCTGGATTACAACATTGCCATTTGGCAAAAATAGTTTTCAGCTCTTTTGAACTGGTAATGCCTAATGTTCATTCTTTTCTGTGAGTTCAGGTGGAAATAGAATAGGGGAATATGTATCCAATGAGCAGACTTGAAATATATAGACAGAGGGTATTCCCATTAATAAGTAGGTTAGCAAGCCATATTGAGTTCCCCTCTCTCTACTttaatcaccccaaaccatttGTCTTAATCTTTTGAGTTTGACGATCCATGTTCTAGTCATGTTGCCAATGTAGGAGTCATGACTTTAAAtccaaatcaaataaaaacacaaagggaaatatttttaagagacagacagttgtGAGAAGACATTCAacatttattgtatataaatagcttcattttttttcttggacaCACATGCATAGACGTgcttattatataaaaaaattgcacataTATTTTCTCAGATGTCTattgtagattaaaaaaaagcttttatcatgaaaatatacattttattcattcccTTGACACATCTGCCCTTGTATACCCATATGGTGCAAGTGCAACCAGTGCTTTCCTGATGTACATTTGTAGTTCTTGAAGAATCTACCCCTACTTCATTCAATGTTGTTCACAGTCTCTCTTGATCACATGTGTGGACACTAGTTAGTCCAATGTCACATGTCTAGGTCCAATCAAACAGGGTTGGCCTTCACTCAGCACTATTTTACATCTCGAATCATTCAGACAAGAAAGTAATAATCATGTGACTAATAAGTTGTGATTTTCTCAATTGTGATTTTGAAAGTGAGCTCACGAGATCAGCTGGAGTTTCAGTCATTAGAGAATCAAGTAATCACAAGCAGGATCACAAATGTAATCACAAAAAGGGCCTGATCAGTTGGTTGATGTTGTTTCTTTCCCCACCAAGATTATTGAAGTAGACTTGCTATGCAAGAGGCCAGGGCAGTAGGGGACAGGGAGTGGTTCTTATGCACTTTAGAACGTGTTGATTTCAGGTATGCACGCCTATGAGCGCTGTATTTCAGGCCAGCTGAGAGATTTTAATCATATATTCCAAATCATTATACTGTACAAGTATTAGGGTAATTACAGTGTATTCCTACATGTATATACAAACTTTCATGAATTATTCTacataatgattaattaattgtgtGATTACTCATAATGGTTTTGAGTAATTGAAATGGGTTTTAATTAACTGAATCTGAATGATTAATGTGTTTTCCTTCAAAGGAAATGAATGTAATGAATCAGTTTAATTTACAatgaacatattattatttcatggttcaaaaagaaacattaacacCCCCAGAACAGTACCAACTAGAGAGACAGTAGTGTGAGAATTAAAAATTTGaagcaatataaaaaaaaaaagaatctgttaTGAGATTTATTAGTCAGCTGAAATAAAGATATTGAAGGGATAATAAGGTCATCAGTGTCACCTCCAGCTCTACCATCAACCTTGTTCTTTTGCTTTATTCATATGCAATAGCACCAAGAGATTCTAACATACACTCTGTACTGCGTAAAGGAAAAAGTGCAAAGGAAATAATTACTGCAGTctgaaaatacaaaatgcaaacatttttttttgcatattcgGTTCACTGTGGTtttcataaaatcatataaacacTCATATTGTTGACTTACAAATCAtgcatcacatcacattacatcacatcacatcaagtGGCATCCCTGCATTACAACCTTTACATACCAAACAAAGACAAGGCAGAAATTACAGTACTAGAGCtttaaaagaaatgtgaaaacatatatatatatatatatatatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU413212 lncRNA downstream 3841 3315374 ~ 3315944 (-) True G348695
TU413196 lncRNA downstream 54963 3262269 ~ 3264822 (-) True G348681
TU413193 lncRNA downstream 60733 3256110 ~ 3259052 (-) True G348678
TU413177 lncRNA downstream 96286 3223300 ~ 3223499 (-) True G348669
TU413169 lncRNA downstream 111951 3205505 ~ 3207834 (-) True G348662
TU413444 lncRNA upstream 189174 3550577 ~ 3551672 (-) True G348906
TU413450 lncRNA upstream 200263 3561666 ~ 3607376 (-) False LOC117595903
TU413448 lncRNA upstream 235390 3596793 ~ 3607376 (-) True LOC117595903
XR_004577093.1 lncRNA upstream 238256 3599659 ~ 3607371 (-) False LOC117595903
TU413447 lncRNA upstream 253668 3615071 ~ 3616581 (-) True G348909
XM_034299051.1 mRNA downstream 6929 3307168 ~ 3312856 (-) False klf9
XM_026939927.2 mRNA downstream 6929 3307168 ~ 3312856 (-) True klf9
XM_026939936.2 mRNA downstream 76944 3229104 ~ 3242841 (-) False araf
XM_026939819.2 mRNA upstream 149712 3511115 ~ 3546480 (-) False cemip2
XM_026939818.2 mRNA upstream 149712 3511115 ~ 3545701 (-) True cemip2
XM_026940108.2 mRNA upstream 191116 3552519 ~ 3568775 (-) True abhd17b
XM_034299360.1 mRNA upstream 303569 3664972 ~ 3673856 (-) True LOC113542282
XM_026939625.2 mRNA upstream 472796 3834199 ~ 3879944 (-) False trpm6
XR_003404311.2 other downstream 153531 3156042 ~ 3166254 (-) False tm2d2
XR_004577129.1 other downstream 354896 2814858 ~ 2964889 (-) False unc5db
TU412979 other downstream 533889 2784677 ~ 2785896 (-) True G348491
TU412757 other downstream 655410 2637755 ~ 2664375 (-) False zmat4a
TU412645 other downstream 1088218 2179543 ~ 2231567 (-) False LOC113542580
TU414275 other upstream 1177880 4539283 ~ 4539831 (-) True G349584
TU414706 other upstream 1960110 5321513 ~ 5364282 (-) True G349951
TU414705 other upstream 2000879 5362282 ~ 5367010 (-) False LOC113542328
XR_004577106.1 other upstream 2215217 5576620 ~ 5578981 (-) False LOC117595919
XR_004577154.1 other upstream 2695578 6056981 ~ 6120959 (-) True pappab

Expression Profile