RNA id: TCONS_00008086


Basic Information

Item Value
RNA id TCONS_00008086
length 3636
RNA type mRNA
GC content 0.51
exon number 31
gene id XLOC_004232
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 33870357 ~ 33919309 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGGAGCCGCAGTAATTCAGGAGTGAGGCTGGACGGATTTGCCAGACTTGTCCATGAAACAATATTATGCCACCAGAATCCAGTGACGGGTCTACTGCCGGCCAGCGAGCAGCAGAAGGATGCCTGGGTCAGGGATAACGTGTACAGCATTTTGGCAGTGTGGGGACTTGGGATGGCTTACCGCAAGAATGCAGACCGTGATGAGGATAAAGCCAAAGCCTATGAGCTTGAACAGagtGTGGTTAAGCTAATGCAAGGTCTGCTGCAGTGTATGATGAGACAGGTGGAGAAGGTAGAGAagttcaaacacacacagagcacaAAGGACTGCCTGCATGCCAAATATCACACACCTACCTGTGCCACAGTGGTCGGAGATGACCAATGGGGGCACCTGCAGGTCGATGCCACCTCACTCTACCTGCTCACACTGGCCCAGATGACTGCCTCAGGTCTGCACATCATATCAAACTTAGACGAGGTGGCTTTCATCCAGAACCTGGTGTTCTACATCGAAGCAGCGTACAAAGTGGCTGATTATGGGATGTGGGAGCGAGGAGACAAGACCAATCAAGGCATTCCTGAACTGAATGGCAGCTCCGTCGGAATGGCAAAGGCAGCTTTGGAGGCCATAGATGAGCTTGATTTGTTTGGAGCTCATGGAGGTCCAAAATCAGTGATTCACGTTCTCCCAGATGAAGTAGAACATTGTCAgTCTATCTTGTGCTCCATGCTTCCTCGAGCCTCTACCTCTAAAGAGATTGATGCTGGTCTGCTCTCTGTCATCTCATTTCCTGCCTTTGCTGTGGAGGATGCGGATCTGGTCAACATCACCAAGGCCGAAATCATCACCAAGCTGCAGGGACGTTATGGCTGTTGTCGATTTATCCGAGATGGATACAGGACTCCAAAAGAGGACCCTACTCGACTTCACTATGACCCTGCCGAGCTGAAGCTCTTTGAGAACATTGAATGTGAATGGCCAGTGTTTTGGACTTATCTAATACTCGATGGCATCTTCAATGCAGATCATGAACAGGTGGAGGAATACAGAGAGGCTCTGGATGGGGTTTTGATCAGGGGCAAACATGGTATCCGTCTGGTGCCTGAACTCTACGCTGTACCTGCTGACAAAGTTGAGGAGGAGTACAGGAACCCTCATTCGGTGGAGCGTGTGGCTTTTGGGCAGCTTCCACACATGTGGGGTCAGTCTCTGTATATACTGGGCAGTCTCCTGACTGAGggATTTCTGGCCCCTGGTGAAATTGATCCACTTAATAGGCGGTTTTCTAAAGAATTCAAGCCTGATGTTGTTGTGCAAGTGAGTGTAGTGGCTGAGTCAGTGCAGATCCAGCAGCTGCTGAGGGATCATGGGATTGAGGTTCAGACCGTCTCTGATGTATCGCCCATCCGGGTTATGCCAGCTCGCATCCTGAGCCACATTTATGTGAAACTGGGAAACTGTAAAAAACTCAACTTGAGTGGACGACCGTACAGGCACATTGGCGTTCTGGGAACTTCAAAGTTTTATGAGATCAGAAATGGCACTTACACTTTTACTCCACAGTTCATTGACCAGCATCACTTCTACTTGGCTCTGGATAACCAGATGATTGTTGAGATGTTGCGGACAGAACTTGCTTACCTCTCGTCCTGCTGGCGAATGACAGGAAGACCAACCCTCACATTCCCTATTACACAGAGCATGCTGGTTGAAGATGGTGACAGTATTGACCCCTGCATCCTCTCCACCTTGCGGAAGCTTCAGGATGGCTACTTTGGTGGTGCAAGGGTGCAGATGGCAAACCTGTCCTCGTTCCTCACCACCTCCTTCCACACGCAGCTCAGCTTTTTGGACGGCGACTCTGAAGAGGATCTgctggaggaggaagaggaggaagatgAAGAGTGCTTTGTTTTTCCAGCAGGAGGATCAGGAGACATGTTCGACCAGTACCTCACGGATTTATTGCACAGCACTACCACAAAATGCCATCTACCTCCCATCCAAAGAGGGCAGCACCACGTTTTCAGTGCTGAACACACCACCAGAGACATACTGTCCTTCATGGCCCAAGTTCAAGGCCACAACATGCCAAAGCCGTCCATGTATTTGCCTGTTGCCCCTATCATGAGCAAACACAGGAAGTCTCTGAACCTGCTAGATGTCCCTCAACATAAAGCTGATAACGTTGACCTGCATTTACCACGCGATTCTCATGGAAACACAGACTTTGTTCATCTGGTGGATCAGCTTAAGCACTGTCCAACCCTGCAGGACCAGGCCGATATCCTCTATGTCCTCTATGCTATGAAagGCCCGAACTGGGTGGTGAGTTTGTCAGGACAGGGTGAGGCGACAGTTCGCTCTCTGCTGGAGGAGCTGTACGTTCGGGCAGGAGCGTGTAAGGAATGGGGCCTCATCCGCTACATCTCCGGCATCCTGAAGAAGAGGGTGGAAGTCCTTGCTGAAGCCTGCACAGATCTGATCTCTCATCATAAACAGCTGACAGTGGGTCTTCCTCCTGAACCCAGAGAGAAAGTCATCACGGTTCCTCTTCCTCCTGAAGAATTGATCAGCTTGATCTACGAGGCCAGCGGACAAGACATCAGCATTGCAGTCCTCACACAGGAGATTATGGTGTATTTGGCCATGTACGTGCGCTCTCAGCCATCTCTGTTTGGAGATATGCTGCGTCTGCGCATCGGTCTCATCATGCAGGTGATGGCAACTGAACTGGCCCGCAGTCTGCACTGCTCAGGAGAAGAGGCTTCAGAGAGCCTGATGAGCCTCAGTCCTTTTGACATGAAGAATCTCTTACATCACATCCTGAGCGGGAAAGAGTTTGGCGTTGAGAGGAGCATGCGTCCAATTCAGTCGTCTGCCACCAGTCCTGCCATCTCCATCCATGAGCTCGGACACACAGGAGCCACCAAGACAGAGCGGACAGGCATCAGAAAACTCAAGACTGAAATTAAACAGGTGGACAGTCATTCCATCAGCAGTAATGTCACATCACCTCGCTCCACGcgATGCAGCAGCCCATCCACTCCCAGCGGGATTTTGTCTCCGACCGGGACAGGAGACTGTCACCTGCAGTGGGAGGAGCGGCAGGGCCAGTGGCTGAGGAGACGCAGGTTGGACGGGGCCATCAACCGGGTCCCCATGGGCTTCTATCAGAAAGTCTGGAAGATTCTCCAAAAGTGTCATGGCCTCTCCATCGCTGGTTATGTCCTGCCTTCTTCTACCACCCGTGAGATGACGGAGGGAGAGATCAAGTTTGCGGTGCATGTGGAGTCTGTCCTGAATCATGTTCCTCAGCCGGAGTACAGGCAGCTGCTGGTGGAGGCTATTATGGTGCTCACTCTTGTGGCCGACATGGAGATTCCTAGTGTTGGTGGAATTATTCACATCGACCGCATCGTTCACATGGCCAACGATCTCTTTCAGCAGGATCAGAGATCCAGCGGGGCCAATGAGTATTTCTTGGAGCAAGATCCTGCCACAGGAATCTGTAACTTCTTCTATGACAGCGCTCCCAGCGGCAGCTATGGCACCATGACTTATCTTTCCAAGGCGGTGGTCACATATGTTCAAGACTTCCTGCCAAACAGCAGCTGTCTAATGCAGTAA

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0005977 glycogen metabolic process biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130422-1 Predicted to enable calmodulin binding activity. Predicted to act upstream of or within glycogen metabolic process. Predicted to be located in plasma membrane. Used to study visceral heterotaxy. Human ortholog(s) of this gene implicated in glycogen storage disease and glycogen storage disease IXa. Orthologous to human PHKA2 (phosphorylase kinase regulatory subunit alpha 2).

Ensembl:

ensembl_id ENSDART00000181203

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008832 lncRNA downstream 184672 33676834 ~ 33688949 (-) True XLOC_004229
TCONS_00008831 lncRNA downstream 187710 33676834 ~ 33685911 (-) False XLOC_004229
TCONS_00008481 lncRNA downstream 472145 33344982 ~ 33401476 (-) False XLOC_004227
TCONS_00008480 lncRNA downstream 529164 33339539 ~ 33344457 (-) False XLOC_004227
TCONS_00008479 lncRNA downstream 533443 33337120 ~ 33340178 (-) False XLOC_004227
TCONS_00008482 lncRNA upstream 73019 33992033 ~ 33993147 (-) True XLOC_004235
TCONS_00008099 lncRNA upstream 301336 34220350 ~ 34225557 (-) False XLOC_004242
TCONS_00008100 lncRNA upstream 303879 34222893 ~ 34225798 (-) True XLOC_004242
TCONS_00008101 lncRNA upstream 330442 34249456 ~ 34255220 (-) True XLOC_004243
TCONS_00008833 lncRNA upstream 396511 34315525 ~ 34358689 (-) True XLOC_004244
TCONS_00008084 mRNA downstream 4713 33864502 ~ 33868908 (-) True XLOC_004231
TCONS_00008082 mRNA downstream 4735 33861177 ~ 33868886 (-) False XLOC_004231
TCONS_00008083 mRNA downstream 4740 33864268 ~ 33868881 (-) False XLOC_004231
TCONS_00008081 mRNA downstream 15710 33846440 ~ 33857911 (-) True XLOC_004230
TCONS_00008080 mRNA downstream 255009 33598614 ~ 33618612 (-) True XLOC_004228
TCONS_00008087 mRNA upstream 2344 33921358 ~ 33960318 (-) True XLOC_004233
TCONS_00008089 mRNA upstream 77512 33996526 ~ 34065718 (-) True XLOC_004236
TCONS_00008090 mRNA upstream 165518 34084532 ~ 34097418 (-) False XLOC_004237
TCONS_00008091 mRNA upstream 172396 34091410 ~ 34097437 (-) True XLOC_004237
TCONS_00008092 mRNA upstream 197720 34116734 ~ 34147205 (-) False XLOC_004238
TCONS_00008078 other downstream 502254 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008075 other downstream 1136028 32731165 ~ 32737593 (-) True XLOC_004221
TCONS_00008067 other downstream 2701367 31170349 ~ 31172254 (-) True XLOC_004210
TCONS_00008056 other downstream 3364830 30424226 ~ 30508791 (-) True XLOC_004205
TCONS_00008052 other downstream 3508797 30358109 ~ 30364824 (-) False XLOC_004204
TCONS_00008088 other upstream 47144 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008102 other upstream 436530 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008105 other upstream 547381 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008119 other upstream 1306008 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008174 other upstream 3380357 37299371 ~ 37299485 (-) True XLOC_004279

Expression Profile

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