RNA id: XM_034299212.1


Basic Information

Item Value
RNA id XM_034299212.1
length 4277
RNA type mRNA
GC content 0.47
exon number 15
gene id loxl2b
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 2746147 ~ 2773403 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGcaaaattgaaaggaaacatactaagaaacagaaacagtatCCTTATTACGTCAAATCCACTTTGAAGCATGGTTGCGTTTACGCGAGCCTGTTTTCAGCACCGTCCCGATTGCAGaacgtagtaattttctttcattacaGGCCCATCGTTAGAGTATCATCGTCGTATAATAATAACACAGACAACCAAGCGAAAAACAGGGGTTTTTTGGGATCATCTCGTACAGTGTCACTCATCCGGCTTTACTCTACACACTTCCATGTCATTAAGGCAAGTCATGAGGGCACGCTTATAGAAAACCGAAACAAGGCCCAAAAGGAGGTAGAAAAGCTCGcttcaatctggcaaccccagGACTCGGGCTGGACTGCAGACAAAAGTTGAGGGAGTTTTTGGGAAACAGATGAGAGGAGACTGAAGCCACATCGGACACAAAAGGACTTGCTGGACATAAACCACAATGCTGGCTCCCTGGTCTCTCCAGTGCCACCTGCCAGTGTTAGCATGCATATGGAGCCTCTGCCAAGCGCAATACGAGTACCTGGCTTACCCCCATGGTTACGCCGAGCCCGAACAGGATCACTACACCCTTCCGCAGATTCCCAGTGATGTGCCCAGGATCCAATTACGCTTAGCCGGAGAGAAACGAAAGCACAACGAGGGACGTGTCGAGGTTTATTACGAGGGTCAGTGGGGGACCGTTTGCGATGATGATTTCAACCACCACGCcgctcaggtggtgtgcagagaGCTCGGGTACTCCAAGGCCATCTCCTGGTCGCCTTCCGCCAAATACGGGAAAGGAGAAGGCCGCATCTGGTTTGACAACGTCCACTGCACAGGGAAGGAGAGCACCCTGGCGCAATGCGAGTCTAACGGCATCGGTGTGTCTGACTGCAAACACTCAGAAGACGTCGGAGTCGTCTGCAGTGACCAGAGGATCCCTGGATTCAGGTTCCTCAATCCAGTCACCAACAACATAGAcCATTTGACCATCCAGGTGGAGGATGTACGCATCAAGCCGATTCTGGCCTCCAACAGGAAGCGAATCCCTGTAACTGAGGGCTACGTGGAGGTCAAAGACGACGGCAAATGGAAGCAGATTTGCGATAAGGAGTGGAGTCCCATGAACAGCAGGGTGATCTGCGGCATGTTTGGCTTCCCTGCTGAGAAGAAATACAACACGCGCGTCTACAAGATGTTTGCGCGCAGGAAGACGCACTCGTACTGGGATTACTCGGTGAACTGCACAGGAAACGAAGCCCACCTCTCGAGCTGTAACCTGGGACATTCGCTTTCGTCCAACAACACGTGTACTAAGGGCATCCCCGTGGTGGTGAGCTGCGTGCCAGGCAGAGCCTTCGCTCCAACCCCCTTATCTGGCTACAGGAAAGCTTTCAGACATGAGCAGCCATTGGTGCGTCTGAAAGGAGGCGCGGTGGTTGGCGAGGGTCGGGTGGAGGTGCTGAAAAATGGCGAGTGGGGCACCATTTGTGACGATCACTGGAACCTTGTGGCTGCCACTGTGGTGTGTCGAGAGCTCGGCTTTGGAACCGCCAAGGAAGCGTTGTCTGGAGGTCAACTGGGTCAAGgAATGGGCCCGGTCCACATGAATGAGGTTCAGTGCTCCGGGTTTGAGAAATCTGTCACCGAATGTGTTTTTAACATGGATAAAGACTCAGAGGGATGCAGCCATGAGGAGGATGCTGGAGTCCGCTGCAACGTTCCTGCTATGGGCTTCCAGCAGCGTCTGCGTCTGAGCGGAGGCCGTAACCCATTCGAAGGCCGTGTGGAGGTGCTGATGGAGCGAAACGGCTCTCTGGTGTGGGGAACGGTGTGTGGAGACGGCTGGAGCACCATGGAGGCCATGGTAGTGTGCAGGCAACTCGGCCTCGGCTTTGCCAGCCACGCCTTCCAGgAGACGTGGCACTGGCCCGGGGTGGTGAGTGCTGACGGTCTAGTGATGAGCGGTGTGCGCTGTGCCGGTACTGAgatgtctctgtctcactgtctgcaTCACGGAGAGCACGTGAACTGCCCCAGAGGAGGAGCGCGATACGCCGCCGGGGTTTCCTGCTCTGAGACCGCGTCAGACCTGGTGCTGAACCCGGCGGTGGTGGAGCAGACCACGTACATAGAGGACCGGCCCATGTTCATGCTGCAGTGTGCGTATGAGGAGAACTGCCTGGCCTCCACGTCCAGCTCGACTCCGGCCAACTCATACCGACGCCTGCTGCGCTTCTCCTCCCAGATCCACAACAACGGCCAGGCCGACTTCAAGCCCAAAGCCAGCAGAGAAACCTGGGTCTGGCACGACTGTCACAGACATTACCACAGCATGGAGGTCTTCACTTATTATGATCTGCTCAGCTTAAACGGCTCAAAAGTAGCAGAAGGACACAAAGCCAGCTTCTGTCTCGAGGACTCGGAGTGTGATGAAGGCATTGAAAAGAAATACGAATGTGCCAACTTTGGTGAGCAGGGCATCACAGTGGGGTGCTGGGACACTTACAGACATGATATCGACTGCCAGTGGGTGGACATCACCGACGTCAAGCCTGGGGATTATATATTCCAGATTGTCATTAACCCCAACTACGAGGTGCCCGAGTCTGATTACACCAACAACATTGTGAAATGCAAGACTCGTTATGACGGCCACCGCATATGGATGTACAACTGCCATATAGGTGGATCAGTGAGCGGTGAAGCAGACATACTGTTTCCTGGCCTTTTGAGCAACCAGGTGACCCTCAGGTAAAAGGTGGACAGGTCTAAATGAGACAACGGAGACACAGAGAGCTCGGACCACTATATTTCCTTCCCTGAATGTTTGGTGCTAAATACATGCACCACTCTGTTGGGATGAAATACCCTCCAAcgcccccccccaaaaaaaatcaccctATATGAGAAAACACACTAAAAACTGTAGGACTTGTAATGATAATTATATCATGATAATGACTAACCTTTTTTTCACTGTATACAGTATTGTCACCATAGTCTCTGTCTATATTTCAATTAGTAGAAAATGCCTAGTGCATTCATCAGTTGTCAATCGGTTTGTCAGTCATCCTTCATGTTTGGCCTCGACCACTATCCTTATGCTTGGGACagaatttttttctcagtattgTGGTACAGTTTGATCGACTGATTATCGGTACATGTCTAGCAAAGCAAAACTCCAACAACTACTGGCACAGGACATCcagaaaagaaacacaacacCAATTTCATAATTAATCACAAGTTGTTTCAAAGTGACTTGAGGTAAGGACAACCCAAACATAATGAATTTGCCTCTACTGGCCTCTGGTGTTGGTGATTCAGCTGATTTTTAAGGAAATTctgatgcacttttttttagccTTAATGGACttgtgcacaaacacaaacacaaaggacTCCTGAAGATCAAAAGGAGCCAGATTTGGGAATTGTATTTGCAAAAAAGTTTGCTACCTTAATATTGTTTCAGTATCGTTCAGTATTTTATGATCATATGTCGTATAACTGCAGTTCTctggagaaataaaacagaaacctTTACTAGCATTGGTGACAACCATGACATTGCATTTCCAGAGTGCTCAGTGCTAAGAACCTTTGTGATATCGAATAGGAATCATGGGCACTTGGACAATCTCGGGAGTTTTACTTACCCAAATATCAGGGCAGAAGATAATTACAACTGGTAATATAGAACAACCAATAAATGCTctaataatactaaaaaaataaataaatacacaatctTGATATTTAATGTTTGTACATTTTCTAAATTCAAAGAAATTTTGAgttttttatgatgtaaaagCAGCAGATTAGCAACTTGACTTATGCTAGTTGTGTGGTGTGCTAGCTTAACATTAGGTAGCCTGTTAACATTGTTAGCTGTTAGCTTTAACTTAACATTAGGTAGCTAGCAGATAAGTATACCTGTGTATATTAGTGCATTTAACAACTAGTGCTCTAACTAGTATACTAGTTAGTAATCTAAAATAAGGAGTTAGGTCAAATTTTAGCAACTACTGAGGATACACTCTGGCTagctacatagctagctaagtaacaacagctagctagctagctatttatgaGCTTATCTGTTAAATGCAGTGAGTATTAGAGGCTCAAAAACAAACCATTGCAGGTACCACCTGAGAGAAGGTAAGTAAAACTCCCTTGAGCTTTTTCAATGaacatctataaaaaaaaataataataaaaaaaaacatttgggaaTATAGTCTAACATTTTGC

Function

GO:

id name namespace
GO:0032332 positive regulation of chondrocyte differentiation biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0030199 collagen fibril organization biological_process
GO:0001837 epithelial to mesenchymal transition biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0001935 endothelial cell proliferation biological_process
GO:0001666 response to hypoxia biological_process
GO:0043542 endothelial cell migration biological_process
GO:0005604 basement membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0016020 membrane cellular_component
GO:0005507 copper ion binding molecular_function
GO:0004720 protein-lysine 6-oxidase activity molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG:

id description
K00280 LOXL2_3_4; lysyl oxidase-like protein 2/3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412758 lncRNA downstream 151824 2549097 ~ 2594323 (-) True G348296
TU412773 lncRNA downstream 197137 2548123 ~ 2549010 (-) True G348311
TU412772 lncRNA downstream 198107 2546572 ~ 2548040 (-) True G348310
TU412771 lncRNA downstream 199632 2545415 ~ 2546515 (-) True G348309
TU412742 lncRNA downstream 321816 2423715 ~ 2424331 (-) True G348283
TU412967 lncRNA upstream 319 2773722 ~ 2801204 (-) False LOC113542231
TU412963 lncRNA upstream 6434 2779837 ~ 2831679 (-) True LOC113542231
TU413141 lncRNA upstream 376598 3150001 ~ 3150416 (-) True G348640
TU413168 lncRNA upstream 425279 3198682 ~ 3198896 (-) True G348661
TU413170 lncRNA upstream 430688 3204091 ~ 3205284 (-) True G348663
XM_026939548.2 mRNA downstream 33761 2700997 ~ 2712386 (-) True sfrp1a
XM_026939656.2 mRNA downstream 81665 2601534 ~ 2664482 (-) True zmat4a
XM_026940065.2 mRNA downstream 263964 2465572 ~ 2482183 (-) True LOC113542490
XM_026940243.2 mRNA downstream 287742 2435324 ~ 2458405 (-) True LOC113542614
XM_026940273.2 mRNA downstream 382992 2357271 ~ 2363155 (-) True ogfod2
XM_026939603.2 mRNA upstream 7584 2780987 ~ 2782082 (-) False LOC113542231
XM_026939605.1 mRNA upstream 11158 2784561 ~ 2785074 (-) True zgc:153409
XM_026939604.2 mRNA upstream 12036 2785439 ~ 2785937 (-) True LOC113542232
XM_026939601.2 mRNA upstream 12846 2786249 ~ 2791574 (-) False LOC113542230
XM_026939602.2 mRNA upstream 12846 2786249 ~ 2790896 (-) True LOC113542230
TU412757 other downstream 81772 2637755 ~ 2664375 (-) False zmat4a
TU412645 other downstream 514580 2179543 ~ 2231567 (-) False LOC113542580
TU412644 other downstream 560203 2179543 ~ 2185944 (-) False LOC113542580
TU412577 other downstream 747677 1995902 ~ 1998470 (-) True G348145
TU412500 other downstream 917502 1827898 ~ 1828645 (-) True G348096
TU412979 other upstream 11274 2784677 ~ 2785896 (-) True G348491
XR_004577129.1 other upstream 41455 2814858 ~ 2964889 (-) False unc5db
XR_003404311.2 other upstream 382639 3156042 ~ 3166254 (-) False tm2d2
XR_004577114.1 other upstream 572752 3346155 ~ 3387730 (-) False trpm3
TU414275 other upstream 1765880 4539283 ~ 4539831 (-) True G349584

Expression Profile