RNA id: XM_034299248.1


Basic Information

Item Value
RNA id XM_034299248.1
length 3007
RNA type mRNA
GC content 0.54
exon number 18
gene id erap1b
representative False

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1951629 ~ 1968139 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtcgCGCGAGTTTCCCATGATGCATTGGGTTTGCGcggttttattttcactttcgTTCTCTCGCCCAGTGAGCGGTTTGTTCCGAGGATCTGGGAGAAAACATTAATGACAAAGCAGTTCCTGTAGAACATGGCCCTCCTGGTGCTCCTCCTGTGTTTGTGCTCCGTGTCATCGTCTTGTACTGCAGTGACGCAAGCCAGAGAAGAAACCGAGTCCTCCTTCCCAACATCGACCAGCGGAGAGACGTTCCCCTGGAACAAGATGAGGCTTCCAGAGACCGTCTCTCCGTTTCATTACACTCTCCTCATCCACCCCAACCTCACCAGCCTCGACTTCACAGGGAGAGTGAAGATCCGAGTGGACGTCctccaggacacacacaccGTCGTCCTCCACAGCAAGGAGCTCAACATCTCCAGAGCCGTTCTCCGCAGTTTGGCTGAAGGTCAGAGCCAGGCTCTCAGGGTGCTGGAGTATCCGGCCTACCAGCAGATCGCTCTCATCAGTGAACACATGGTGCTGAGGAGAGGAAGTGTGTACGTCATCGAGCTGGAGTTTGCAGCCAAACTGTCCGAGAGCTTCCACGGTTTATATAAAAGCACGTACCGCTCCAGTGATGGAGAGGAACGGGTGCTGGCCTCCACACAGTTTGAGCCGACGAGCGCGCGAGCAGCTTTCCCCTGTTTCGATGAACCTGCATTCAAAGCCAACTTCTCTATTCACATTCGCCGTGAGAGTAGACACATCACCATCTCCAACATGCCCAAGCTGAGGACGCTGGCTCTCCCAGGCGGTCTGTTTGAGGATCAGTTTGACGAGACTGTGAAGATGAGCACCTACCTGGTGGCCTTCATCGTGTGTGACTTCCTGTCTATCAGCAAACACACTCAGCATGGAGTCGAGATCTCGGTGTACGCTGTACCTGAGAAGATAAAGCAGGCCGAGTTCGCGCTGGACGCTGCAGTGAAGCTGCTGGACTTCTACGATGATTACTTTGACATTCCCTACCCTCTGCCTAAACAAGATCTGGCTGCAATCCCGGACTTCCAGTCAGGTGCTATGGAGAACTGGGGTTTGACCACGTACAGGGAGTCGGCTCTGCTCTTTGACCCCCACAAGTCCTCGGCCTCCGACAAGCTGGGCATCACCATGATCATCGCACACGAGCTCGCTCATCAGTGGTTCGGTAATCTGGTCACGATGCAGTGGTGGAATGATCTCTGGCTGAACGAGGGCTTTGCTAAGTTCATGGAGTTTGTGTCTGTGAACATCACCAACCCCGAGCTGCAAGTGGAGGACTATTTCCTTGAGAAGTGCTTCGAGGCGATGGAGGTAGACTGTTTAAGCTCCTCTCACCCCGTGTCCACCCCCGTGGAGAACCCGGCTCAGATACAGGAGATGTTCGATGACGTGTCTTACGACAAGGGTGCATGTATCCTGCACATGCTGAGGGAGTTCCTGAGCCCTGACGTATTTAAGGTGGGGATTGTTGCCTACCTGAAACGCTACAGCTACCAGAACACCGTCAACACACACCTGTGGGAGAGTCTGACCGCTAAGCAGCACTCTGAAGACGAGGTGGACGTCAGGGCGATGATGGAGACGTGGACCCTGCAGGAAGGCTTCCCGCTCATCACGGTGGAGGTCAGAGGTCGTGAAGTGCGCCTGAGTCAGGAGCGATACCTGAAGGGCGAGGACTCGTCCCAAACCTCTGGATTTCTGTGGCACGTTCCTCTGACGTACGTCACCAGCAGCTCGAGCACAGTGCATCGCTTCCTGCTGAAGACTAAGAcagATGTGCTGTACCTGCCCGAGGAAGTGGACTGGATCAAGTTTAACGTGGACATGAGTGGATATTACATTGTCCATTACGAGGGCTCGGGCTGGGACGACCTCATCACTTTGCTCAATCACAACCACACGGCTCTGAGCAGCAATGATCGGGCCAGCCTCATCAATAATGCCTTCCAGTTGGTCAGCGTGGGTAAGCTGCCACTGGACAAAGCCCTGGACCTGTCGCTATATCTGAGTCGGGAGACTGAGATCATGCCTGTGACGCAGGGCTTCAGTGAGCTCGTGCCACTTTACAAGTTGATGGAGAAGAGGGACACACTGGAGGTGCTGGAGAACCAGATGAAGAGCTACATCGTGCAACTGTTCCGCAAGCTCATTGATCAGCAGGTGTGGAGTGATGATGGATCGGTGTCTCAGAGAATGCTGCGCAGTTATCTGCTCCTGTTTGCGTGTGTGAGGGATCACCCGCCCTGCGTCTCGACCGCCAGCGAGCTCTTCAACAAGTGGAAGGAGTCTGATGGCAAaatgagTCTTCCTAACGATGTGAGTCTGGCAGTATTTGCGGTCGGGGCTCGCACCGAGGAAGGATGGAACTTCCTGTTTGAGAAGTACCGTGAAACAATCTACACTTCTCTGAAGAGCCGGATCAAGTCGGCCCTCTCCATCACTCCTCTCGCTCACAAACTGAAATGGATGATGGAGCAGAGTTTGGAGGGATCGGTGATGAAGACACAGGACCTGCCGTATGTCGTGGTGTCCATCAGTAGGAACCCTAAAGGTTATAAACACACCTGGGACTTCCTGAGGGCAAACTGGGACTCGCTGGTGAAGAAgTTCGACCTCGGGTCCCACTCCATAGCGCACATGGTGACAGGCGTGACCAGCCAGTACTCCACCAGAGAGAAGCTGGAGGAGATTCGCAGCTTCTTCGGTTCTCTGAGTGCCGAGACGGGCGCTGAGCTGAGGTGCATCCAGCAAGCGCTGGAGAATGTGGAGGAGAACATCCGATGGATGGACAAGAACCTGCCCCTGCTGCAGGCCTGGCTGGATAAGAACCATCTGGAGCCACAGAAGCGCTATGACTTGCACACTGACCTGTGAAGATCCAAAATCAGCCAGTGCCTCGTCACCTGCCTGATCAAGGTCctgaaacataaacagaaaatagtgaggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412511 lncRNA downstream 8918 1805996 ~ 1942711 (-) True G348103
TU412497 lncRNA downstream 75873 1794830 ~ 1875756 (-) True G348094
TU412483 lncRNA downstream 80483 1790117 ~ 1871146 (-) True G348092
TU412476 lncRNA downstream 85555 1785025 ~ 1866074 (-) True G348088
TU412259 lncRNA downstream 184700 1763211 ~ 1766929 (-) True G347905
TU412516 lncRNA upstream 13939 1982054 ~ 2021135 (-) False arvcfb
TU412574 lncRNA upstream 18068 1986183 ~ 1987047 (-) True G348143
TU412579 lncRNA upstream 65442 2033557 ~ 2033864 (-) True G348147
TU412614 lncRNA upstream 143548 2111663 ~ 2181860 (-) True G348180
TU412635 lncRNA upstream 173501 2141616 ~ 2142102 (-) True G348200
XM_026939931.2 mRNA downstream 44056 1901159 ~ 1907573 (-) True rad17
XM_026939612.2 mRNA downstream 51565 1892269 ~ 1900064 (-) True ccdc125
XM_034299260.1 mRNA downstream 53216 1892268 ~ 1898413 (-) False ccdc125
XM_026939783.2 mRNA downstream 59503 1887072 ~ 1892126 (-) False fam151b
XM_026939782.2 mRNA downstream 59505 1886652 ~ 1892124 (-) False fam151b
XM_026940309.2 mRNA upstream 15293 1983408 ~ 2127645 (-) False arvcfb
XM_026940310.2 mRNA upstream 15293 1983408 ~ 2127645 (-) False arvcfb
XM_026940307.2 mRNA upstream 15293 1983408 ~ 2061902 (-) False arvcfb
XM_026940304.2 mRNA upstream 15293 1983408 ~ 2061902 (-) False arvcfb
XM_026940305.2 mRNA upstream 15293 1983408 ~ 2061901 (-) False arvcfb
TU412500 other downstream 122984 1827898 ~ 1828645 (-) True G348096
trnak-uuu_19 other downstream 353087 1598470 ~ 1598542 (-) True trnak-uuu_19
XR_003404300.2 other downstream 421235 1507615 ~ 1530394 (-) False LOC113542373
TU412577 other upstream 27787 1995902 ~ 1998470 (-) True G348145
TU412644 other upstream 211428 2179543 ~ 2185944 (-) False LOC113542580
TU412645 other upstream 211428 2179543 ~ 2231567 (-) False LOC113542580
TU412757 other upstream 669640 2637755 ~ 2664375 (-) False zmat4a
TU412979 other upstream 816562 2784677 ~ 2785896 (-) True G348491

Expression Profile