RNA id: XM_034299263.1


Basic Information

Item Value
RNA id XM_034299263.1
length 1765
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC117595953
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1251870 ~ 1257942 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

actgaGCGGCGGGTTTTACTTCTTATTCAGTGTTTGAGGAagtcagagagtcagagaggCTCTCAGGCAGAAAATGATGGAACTTATctactttttatttgtgttattttaatcCCGCGtggttttatatatgtataaatgtatttttaggaTTAATTCGCTACATGGACGGTTGTCTTGTAAACCGAACTTATACGGATAgtgattaattttgttttacGACCCGTATTAGGGGTTTAGGATTGATTAGGATTTTGGCGGAATGTGGGTGGGTTTTTAACGCCTGACATGGCGCCTGTTCAGGAGTGTTTCATTTCAGCTCCTGGGAAATGCATCCTGCACGGAGAGCATGCTGTAGTGCACGGGAAGGTTGCGTTGGCTGTGAGCTTGAACCTGCGCACGTATCTGCGGCTGCAGGTCACGTCTACAGCTGAAGTGTCCATCAGTCTGCCCAACATCGACACGTTCCTGAGCTGGGACGTCAGTGTGCTGAAACCGCTTCTGTCTCACTGTAAAGGTGAGTGTAGGAGCTCTACAGAGCTGGACACGGAGCTCGTGAGGAAGCTGAGGGAATTTACAGCCATCGCTGATGGATCCACAGACACCAGGAGCATGGCGGTGCTGGCCTTCCTCTACACCTACCTGTGTGTGTTCGCCCACTCCGAAGTCCTGCCCagtctgaaggtgtgtgtgtggtctgagcTGCCTACAGGAGCAGGTTTGGGCTCCAGCGctgcatacagtgtgtgtgtctctgctgctCTGCTCGCCGCCAGAGGAACCATCAGCTCTCCTCTCACACAGAGCCAGGAGACAGccaggtggagTGAACAGGAACTGGAGCTGATCAATAACTGGGCGTTTCAGGGTGAAAAGATCATACATGGCAACCCGTCAGGAGTAGACAACGCTGTGGGAACGTGGGGGGGCTTTCTGCGGTACCATGCTGGGAAAATTACGCCACTGAGCAGaGTGCCCACACTGAGGATACTTCTCACCAACACTAAAAAGTACCACGCAGTACCAAACTCCTCGTTCCCGAAAGTGAAGGACAGAATTAACCAGTACCCGTCTGTGATGGCACCCGTGCTGGAGTCAGTGGATGCTGTGTCACAAATCTGTGAGCGCACACTTGCTGAGATGGCTACAGAGGGAGCTTCAGCCAAACACTACAGCACGCTGGAGGATTTAATAGACATCAACCAGCACCACCTGAACGTGATGGGCGTCAGTCACACGTCTCTGAACACGCTGTGCCAGGTCACACTCACCCACGGCCTTCACAGCAAACTGACTGGAGCTGGGGGAGGAGGCTGCGCCATCACACTGCTCACGCCAGAGACAGGCGAGTCCGTGGTGCGAGGCGTGGTGGAGGAGCTGAAGCAGGTCGGATTTGACTGCTGGGAGGCAGTATCGGCGCCGGGTGTCCTGATGCACTCGCCcacctcactgacacacagcGTCCTCGACATCCTCACCAAATACTGACGatctactgaacacacacacacacacactacagaagaACATTATAGCCATACTAACAGTATTATATATGTTACCTGTGATTACAGCACtgatgaagaacagagtggaCACACATTTCACCACTATAGATAAGATACAAAAATGACATCATCCTCCAGATTTAGCTTGCTAGCTGTGTTTTTAGATAAACATCATAGCTAGCTGGATAGCTAATACAGTGTGGGATCTCTTacttatttaaactttaaatttcaaaataaataagatcTTTGGTTTA

Function

GO:

id name namespace
GO:0008299 isoprenoid biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0004496 mevalonate kinase activity molecular_function
GO:0005524 ATP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412372 lncRNA downstream 20029 1231235 ~ 1231841 (-) True G348003
TU412347 lncRNA downstream 74700 1174117 ~ 1177170 (-) True G347980
TU412326 lncRNA downstream 148986 1083752 ~ 1102884 (-) True G347963
TU412231 lncRNA downstream 178169 1056423 ~ 1073701 (-) False G347896
TU412318 lncRNA downstream 213673 1036539 ~ 1038197 (-) False G347955
XR_004577150.1 lncRNA upstream 6863 1264805 ~ 1266121 (-) True LOC117595969
TU412376 lncRNA upstream 6921 1264863 ~ 1284995 (-) False LOC117595969
TU412260 lncRNA upstream 10367 1268309 ~ 1271159 (-) True LOC113524981
XR_004577145.1 lncRNA upstream 51747 1309689 ~ 1311494 (-) True LOC117595965
XR_004577144.1 lncRNA upstream 80866 1338808 ~ 1339841 (-) True LOC113524984
XM_034299280.1 mRNA downstream 11780 927109 ~ 1240090 (-) True LOC113524993
XM_034299350.1 mRNA downstream 11821 1236871 ~ 1240049 (-) True LOC117595980
XM_034299256.1 mRNA downstream 21222 1188924 ~ 1230648 (-) False tchp
XM_026911379.2 mRNA downstream 21222 1188924 ~ 1230648 (-) False tchp
XM_026911382.2 mRNA downstream 21222 1188924 ~ 1230648 (-) True tchp
XM_034299311.1 mRNA upstream 12193 1270135 ~ 1278867 (-) False LOC113524981
XM_034299351.1 mRNA upstream 35932 1293874 ~ 1297808 (-) True LOC117595981
XM_034299352.1 mRNA upstream 56557 1314499 ~ 1316387 (-) True LOC113528146
XM_034299353.1 mRNA upstream 92374 1350316 ~ 1420706 (-) True LOC113524983
XM_034299285.1 mRNA upstream 100616 1358558 ~ 1369432 (-) True LOC113524988
TU412323 other downstream 172731 1076733 ~ 1079139 (-) True G347960
XR_004577138.1 other downstream 327247 864220 ~ 924623 (-) False LOC113527995
TU411959 other downstream 884135 364006 ~ 367735 (-) True LOC113528009
XR_004577111.1 other downstream 1014598 230525 ~ 237272 (-) False LOC117595925
TU412381 other upstream 98626 1356568 ~ 1369462 (-) False LOC113524988
XR_003404300.2 other upstream 249673 1507615 ~ 1530394 (-) False LOC113542373
XR_003404299.2 other upstream 269650 1527592 ~ 1530388 (-) False LOC113542373
XR_004577143.1 other upstream 270836 1528778 ~ 1530394 (-) False LOC113542373
trnak-uuu_19 other upstream 340528 1598470 ~ 1598542 (-) True trnak-uuu_19

Expression Profile