RNA id: XM_034299280.1


Basic Information

Item Value
RNA id XM_034299280.1
length 1893
RNA type mRNA
GC content 0.46
exon number 11
gene id LOC113524993
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 927109 ~ 1240090 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tagtgtgtatagtgtgagagtgtgagagagtgcagTGAGAGATGGCTCGTGCAGTTCTGAAAGCTCTGATTTTCCTCACAGtttctcttcatctttcatCAGCAGAATAATCCTGCACTCCTCACTTCTCCTCAGAAACTGGTGACGCGACTGAATCCTGAGTTCTTATTGGTCGGGACTCTGagttgtgattggtcagagcGCTGATATAAATATTCCTCCCCCCTCACAGGAGACACATTCCCGCTGAAGACAGGAGCAGCAGCGTCTGTAACTTTCTCTCACCGAGTTACACAGCGTTAAAGAGAGCTAAAGAGAgttaatcttttattattatcattttatttgtgtgtttatagtgtgtagagtgtgagagtgtgagagagtgcagTGAGAGATGGCTCGTGCAGTTCTGAAAGCTCTGATTTTCCTCACAGtttctcttcatctttcatCAGCAGtcACACAGTCTCTGCAGTACATCTACACTGGAGTTACATCAGGAATAAATTTCCCAGAATTCACTCTTGTGGGTCAGTTGGATGGAGAGCAGTTTGACTTCTATGACAGTAACATCAGGAAAATGATCCCGAAGACGGAGTGGATACAGAAGCACGAGGGAGAAGATTACTGgagcagacagacacagaagcaGCAGGGTCATCAGGAGGTCTTCAAAGCCAAGTGTGGCAACGTAATGCAGCGCTTTAACCAGActaaaggagttcACACAGTGCAGAGGATGTACGGCTGTGAGCTCGATGATGACGACACCACTAGAGGATACACTCAGTACGGTTATGATGGAGAAGATTTCGTCAGTTTTGATCTGAAAACTAAAACCTGGATTGCAGCTAAACCTCAAGCTGTGATCACCAAAAACAAGTGGGATCCTAATGCTGGTAATAATGATTACTGGAAGAACTACCTGGAGAACACCTGTATCGAGTGGTTAAAGAAGTACGTGTCTTACGGCAGAGAGACTCTGGAGAGGAAAGttcGTCCCGAGGCGTCAGTGCTCCAGAAACACTCTCCTTCTGCAGAGGTGGTGTGTCATGCTACAGGTTTCTTCCCCAAAGCAGTGGTGATCTCCTGGCAGAAGGACGGAGAGGAGGTGCATgagaatgtggagctcagagagACGTTACCCAACCAGGATGGAAGCTTCCAGAAGAGAAGCATTCTGACAGTTCCAGCTGAGGAGCTGCAGAAACACACCTACACCTGCGTGATTCAGCACAGCAGCTTGGAGAAGGAGTTAGTGCTGCCTGTGAGAGGTGGAGGATCAGATGGAGCACCGATTGCTATCATCGTTGCTGTAGTCGCGGCTCTCGTTGCTCtcgttgctgttgttgctggaATTGTGGtctggaagaagaagaactctgGcttcaaacctgttccagccaAAGCCCCTCTGAAGGAGATTCTTCCTCCAACAACTCTTGaagtgtgactgtgtgtcttcctgctgaactgagagagagagaggaggagaggaagatgaggaactcacactcacacatacatgcatgcacacacatacacacacacacacacacacacacacacacacacacacacattattccaGTGGGTAATCTTGGTGTATgattttcttggtgtttggatGGAGGAGCTTTTTATTGTGAATctgttgttattgctgtaaaATGGGATTATTAGGGATTGTTAGGGTTTTAATTTTTTGCTCTGTGTAAATTCTCGTAGTTTTCTGTGTGATTgggtttgatgtgtgtgtgtgtgtgtttgtcgcTGTGCTGTTCTGTGCCACTGAGCTCAGCGCTGTAGGATCCTGCTTTTGGGGGAAACCAGGTTTTGGAGTAAAGATGGTCAGTGATGGCGTCATAGCGAGTCACTTTCCATTCTTCC

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412274 lncRNA downstream 2442 917601 ~ 924667 (-) False LOC113527995
TU412049 lncRNA downstream 74673 810581 ~ 852436 (-) True G347773
XR_004577124.1 lncRNA downstream 89771 830810 ~ 837338 (-) False LOC117595934
TU412047 lncRNA downstream 92213 833363 ~ 834896 (-) True LOC117595934
TU412034 lncRNA downstream 94179 830983 ~ 832930 (-) True G347758
XR_004577150.1 lncRNA upstream 24715 1264805 ~ 1266121 (-) True LOC117595969
TU412376 lncRNA upstream 24773 1264863 ~ 1284995 (-) False LOC117595969
TU412260 lncRNA upstream 28219 1268309 ~ 1271159 (-) True LOC113524981
XR_004577145.1 lncRNA upstream 69599 1309689 ~ 1311494 (-) True LOC117595965
XR_004577144.1 lncRNA upstream 98718 1338808 ~ 1339841 (-) True LOC113524984
XM_034299228.1 mRNA downstream 2460 856780 ~ 924649 (-) False LOC113527995
XM_034299229.1 mRNA downstream 2486 856780 ~ 924623 (-) False LOC113527995
XM_034299230.1 mRNA downstream 2486 856780 ~ 924623 (-) False LOC113527995
XM_034299226.1 mRNA downstream 2486 856780 ~ 924623 (-) False LOC113527995
XM_034299227.1 mRNA downstream 2486 856780 ~ 924623 (-) True LOC113527995
XM_034299263.1 mRNA upstream 11780 1251870 ~ 1257942 (-) True LOC117595953
XM_034299311.1 mRNA upstream 30045 1270135 ~ 1278867 (-) False LOC113524981
XM_034299351.1 mRNA upstream 53784 1293874 ~ 1297808 (-) True LOC117595981
XM_034299352.1 mRNA upstream 74409 1314499 ~ 1316387 (-) True LOC113528146
XM_034299353.1 mRNA upstream 110226 1350316 ~ 1420706 (-) True LOC113524983
XR_004577138.1 other downstream 2486 864220 ~ 924623 (-) False LOC113527995
TU411959 other downstream 559374 364006 ~ 367735 (-) True LOC113528009
XR_004577111.1 other downstream 689837 230525 ~ 237272 (-) False LOC117595925
XR_004577112.1 other downstream 690745 230525 ~ 236364 (-) True LOC117595925
TU411849 other downstream 716467 206493 ~ 210642 (-) False LOC113528266
TU412381 other upstream 116478 1356568 ~ 1369462 (-) False LOC113524988
XR_003404300.2 other upstream 267525 1507615 ~ 1530394 (-) False LOC113542373
XR_003404299.2 other upstream 287502 1527592 ~ 1530388 (-) False LOC113542373
XR_004577143.1 other upstream 288688 1528778 ~ 1530394 (-) False LOC113542373
trnak-uuu_19 other upstream 358380 1598470 ~ 1598542 (-) True trnak-uuu_19

Expression Profile