RNA id: XM_034299307.1


Basic Information

Item Value
RNA id XM_034299307.1
length 1820
RNA type mRNA
GC content 0.37
exon number 7
gene id rnf181
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 2156986 ~ 2163920 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtagtgACCCTGTGTAGTGAGGAAGGAGGCGTTTGGACGCGGGCCGTGTGATGAGGATGATGCAGCAGAGTTAGCTCCGGCTTTAACCGCCAGCCCTGAGCCACACATCCTCCGGTGACGgactgagctgtaagtgtgtgtgtgtgatgtatgtgtgtgtgttcatcatgAGCTCGTACTTTGATGAACATGACTGTGAGCCCACAGACCCAGAGGAGCAGTACAGACAGAACGCCATGCTGGAGCTGGCCAGGTCTCTGATGCAGGGTTTGGACGTGGACTTTGGATCTCTGGATGTTTCCGAGTGGGATCAGCGTCTTCCTCCTCCTGCAGCCAAACGCGTAGTGCAGAGTCTTCCTCAGCTCGTCATATCCCCACAGCAAGCAGATAAAGGCCTGAAGTGTCCTGTGTGTCTACTGGAGTTCGAGGAGCAGGAGACGGTGCGGGAGATGCCCTGCAAACATCTGTTCCACTCCAGCTGCATCCTGCCCTGGCTGGGAAAGACCAACTCGTGTCCTCTGTGTCGACTCGAGCTGCCCACAGACAACCCCGACTACGAGCAGTTTAAAAAGGACAAGgaccggagaagacagagagaccaCCGTCTGGAGGATCTTCATGGAGCCATgtacacatgacacacacacacacacacactctctttatATGCAGGGCTTAAATCATGACGTGCGGCTTTGACatgctgctgtctctctgatgcAAGTAAGTTTGGAccaggtttatatatatatattatatattatatgaaatataaattatgTTACAGTAGGATTTGTTTAAGTGTGTACATCTACAGAGTGCATCTGATTGTCTTACTGTCCTGTATGATTTTAGCGTAAATTTACTGAAAgcttctttttaaaatacagaaaactgcTTTATGAAATGTCGGCACGGTTACATCACGatcctgtttatttttgtggttTAATAGCAAAGatttagagtaaaaaaaataataaaatttgagATTGTTATATTGTACTGGAATTACTGGGGGAAAATATGATGAGTGTGTAAATAATTCAGCCCTTGGCTGTTGAAGAATGAACGAGTGATTTTGGGAAAACAGAATTTTGTAAATGTTgcatatcatttatttaaagaaaaaaaaaatttacacccCCCTCcccaaaattatatttaaaaaaaatcagcaattaGTTTATGATTTATATCAATCACTATAAAATAATGATGAGTTACAGTgtataaaattaatgaaatatttgcaataatttatattaactaTTAGGcaattcatataaaatattcaaaaataaaaccatatactAAGGATGGAAATTATAcactaaaaatgtaatttttttacagaTCAGTGTGTGCATCGTTCTTGCTGAGTCTGcaataaatactaataataaaataataactaataaaaataacttttatacaAAAGATCTAAAGATCAGGATTTCCCataaactgcagaaaaaaaggacacgtgtacatattattattatttattcatcattcaGATTGTAATCCAATAGAAATATCTGAACAGAGAGAAATCATCAAAACGATACAgaaatcgttttttttttatacacaaagtgatttataaaataaaaaatactctCTGCACCGGTTTATATTTCAGATTTGGAATTTGATCCTTTTAtcctatactttttttttttttttttctgaagagaTTGTGctgataaaaaaatacacatttaaagacaTCAGAAAAAGTGTAAcaggctggaaaaaaaagaaagaaacataataaaagacaaataataaaagtgacTTCAGTTTTACCCATGA

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K22378 RNF181; E3 ubiquitin-protein ligase RNF181

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412635 lncRNA downstream 14884 2141616 ~ 2142102 (-) True G348200
TU412579 lncRNA downstream 123122 2033557 ~ 2033864 (-) True G348147
TU412516 lncRNA downstream 135851 1982054 ~ 2021135 (-) False arvcfb
TU412574 lncRNA downstream 169939 1986183 ~ 1987047 (-) True G348143
TU412511 lncRNA downstream 214275 1805996 ~ 1942711 (-) True G348103
XR_004577113.1 lncRNA upstream 78288 2242208 ~ 2242816 (-) True LOC117595926
TU412672 lncRNA upstream 142205 2306125 ~ 2308604 (-) True G348233
TU412719 lncRNA upstream 236937 2400857 ~ 2401493 (-) True G348264
TU412721 lncRNA upstream 237113 2401033 ~ 2401493 (-) False G348264
TU412742 lncRNA upstream 259795 2423715 ~ 2424331 (-) True G348283
XM_026940309.2 mRNA downstream 29341 1983408 ~ 2127645 (-) False arvcfb
XM_026940310.2 mRNA downstream 29341 1983408 ~ 2127645 (-) False arvcfb
XM_026940307.2 mRNA downstream 95084 1983408 ~ 2061902 (-) False arvcfb
XM_026940304.2 mRNA downstream 95084 1983408 ~ 2061902 (-) False arvcfb
XM_026940305.2 mRNA downstream 95085 1983408 ~ 2061901 (-) False arvcfb
XM_026940198.2 mRNA upstream 553 2164473 ~ 2166382 (-) False LOC113542577
XM_026940201.2 mRNA upstream 553 2164473 ~ 2166382 (-) False LOC113542577
XM_026940200.2 mRNA upstream 553 2164473 ~ 2166382 (-) True LOC113542577
XM_034298933.1 mRNA upstream 5415 2169335 ~ 2177813 (-) True LOC113542514
XM_026940098.2 mRNA upstream 5415 2169335 ~ 2172941 (-) False LOC113542514
TU412577 other downstream 158516 1995902 ~ 1998470 (-) True G348145
TU412500 other downstream 328341 1827898 ~ 1828645 (-) True G348096
trnak-uuu_19 other downstream 558444 1598470 ~ 1598542 (-) True trnak-uuu_19
XR_003404300.2 other downstream 626592 1507615 ~ 1530394 (-) False LOC113542373
TU412644 other upstream 15623 2179543 ~ 2185944 (-) False LOC113542580
TU412645 other upstream 15623 2179543 ~ 2231567 (-) False LOC113542580
TU412757 other upstream 473835 2637755 ~ 2664375 (-) False zmat4a
TU412979 other upstream 620757 2784677 ~ 2785896 (-) True G348491
XR_004577129.1 other upstream 650938 2814858 ~ 2964889 (-) False unc5db

Expression Profile