RNA id: XM_034299317.1


Basic Information

Item Value
RNA id XM_034299317.1
length 2255
RNA type mRNA
GC content 0.47
exon number 15
gene id ciz1b
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 5943302 ~ 5953387 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaggaaggaaggaagaaaagatgATCCGCGCAAAGGAAAAGCAGCTGCAGCCCCGCGCCTCCATCCCGTCTCTGCTGTCTCTGTCCACACCTCCAGCTTTCCTCCAGTCAGATCCCCACCTGCGGCCAGGGCCACGAATGCCAAGCAGAGGGCCTCCTGGAGGACATCCATTTCCATCTGCACAGACTGTTAGACCTGCCATGTCACAGGGCCTCCTGGGTCCCTACCCCCTGCTGCAGCACGCAGTGCCCATGCCCCGACGACCAGAGATGCCACTGTGTCGTGGGAAGCAGCTACGCCCACCTTTTCTATCTCCAGGAGGCGGCCGGTCTCTTCTCGGCTCTGCTCCCGTCGGTGTTCTGCTGAGGACCCCACGTGTGGCCTTTACACGTGAACATCACCATGAGTCACGTGGAGCTTTTATGAATAAGgaAGGCTCTATGCACAATCTTCAGAGAAAGAGGCAAAACGGCCAGGTTGCAGAAGAGAAAAGTAATGGACAGATGAGCAAATGCAGAACAGATGTAAaaacagatgtaaaaaaaaaagaggGAAAGAAACTGGAAGCATCTGTTGAAAGCCAGGCCTCATCCTCTGAGCAAACAGAGCCTCCTGGGAAAAAGCAGAAGAATCATGgAGCTAATAAGTTGGTTGAAGAGTGTGAAGGTGGAGATGCAGAGCAAAAATCATCAGATACATCAGCGATCCAAGAGCAGGAAGACTACTTGCATGCTTATGCAGAGGAGGAATGCTCATCTACTGAAGCTGACAAAGAAGTGGAGCAGAGCAGGACAGCAGAGGTGCTGGGTGTGGGCACATCTCTTAAGGTGACCATTCAGCGCAGCAGCGAGAGTCGAGCCTTCAGCACTGGGTCGGAGGAGGCAGCAGTCACTGCAGGCTCAGGCATGGACAGAGATAAGAGCATGACTGCAGACAAGTTCTGCTGCTATATCTGCAATGTCACTTGTCCTGACCAACACGACTTTCAGACTCACATGATCAGCTTGGAACACCAGCAGAAGATGATGGAGATTCAGCACCTGAGTAACACCTGCCTGGCAACACTGCTACCCAAAATGCACCAGTCACTACAGGGCAAATACAGAGGCCTGCAGCGCTGGTGTGCAATCTGCCAGTGTCATTTTACTGGTGACCTTATCGAACACAGAAGAACCAAGAAGCACAAGATGGCGAAGGTCTCTTCCAGACCATTCTGCACAGTGTGTGAGCGACACTTCAGAACTCCTCGCAAGTTTGTGGAGCACATGAAGTCCCCAGAGCACAAACAGCAAGTTGAGGAGCTAAAAGAAGGAGCACCTGAAGTCATGGAGGAACTCATAACATTAGATGCCATAGGTTGCTTTGAAGATGAAGATGACTATGAGGAAGAAGGAAGtgaagatgaggaggaagacATGGTGTCTGAACAGGTTCATCCAGCAGAGATTAATGATGATAAAGAGTATGATCCAGACACACAGTATGGCACCAGTTTTGTAGTCCCAGTAGCAGGCTTCCTCTGTAAACTCTGCCATAAGTTCTACCACTTTGAGTCCCGAGCTCGGGAGACACACTGCAAGTCTCTCACTCACTACCAGAACTTACAGAAGTACAAGGCTCTGCTGAACCTACCTCAGGAGGCGGATGAGAACCCAGCCAGTTATTTATGTAATCTTCAGAACGTTGAGAACAGCAGTGCGTGCACTGCAGAGATGAAGGACagacatgaggaagaggagaactCGGAAACCCAGTCAGATTTCATTACACACCCAGCTGCTGCCCACACGAAGAAACAACACTCAAAATCCCCGCACAAAAGTCCAACCTCAAAACCATTGCCTGAGTCCTCAGCCACACAAAACCCTAGTGTGGGTTTAAAGCATCTGACTGCTGAAAAAAATCTCTGATTGTGGTTCTTCCACACAGAAAGAGAAGCCTCTTAGTAAGTCTAAGGAAACCTCAAAGTCTCATTGATGTACATATCACTGCTATACGTCTGATTCCGGAGCTCAGAAGCTGTAGATTAAACTTTCTAAAAACATGTCTTTCTTTACCATATGCCACATCTGGAGCTTTGACCATGTGACCATATACAGTGCAATGAAAATTTAATTagactgtgattttttttttttctcattttatttttataactttaattttattacatatatttttcttaGAATGTCGGTTTTAATTTTCTATCCAATACTaaattaaagtggacagtaagtTTATTACTGGATATTACA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577159.1 lncRNA downstream 1470 5938466 ~ 5941832 (-) True LOC117595975
TU415047 lncRNA downstream 1659 5941297 ~ 5941643 (-) False LOC117595975
TU414888 lncRNA downstream 212582 5730462 ~ 5730720 (-) True G350114
XR_004577085.1 lncRNA downstream 232828 5707923 ~ 5710474 (-) True LOC117595899
TU414864 lncRNA downstream 252533 5690361 ~ 5690769 (-) True G350090
TU415366 lncRNA upstream 355745 6309132 ~ 6310450 (-) True G350513
XR_003404315.2 lncRNA upstream 393276 6346663 ~ 6352343 (-) True LOC113542569
XR_004577094.1 lncRNA upstream 429717 6383104 ~ 6388571 (-) True LOC117595904
TU415571 lncRNA upstream 741468 6694855 ~ 6695063 (-) True G350664
TU415621 lncRNA upstream 789006 6742393 ~ 6742602 (-) True G350714
XM_026940130.2 mRNA downstream 4957 5929151 ~ 5938345 (-) True surf4l
XM_026940127.2 mRNA downstream 72914 5865838 ~ 5870388 (-) True prdm12b
XM_026940113.2 mRNA downstream 78297 5840501 ~ 5865005 (-) True c5
XM_034299312.1 mRNA downstream 104768 5791410 ~ 5838534 (-) True cntrl
XM_026940114.2 mRNA upstream 105884 6059271 ~ 6120959 (-) False pappab
XM_034299318.1 mRNA upstream 207485 6160872 ~ 6161633 (-) True cmlc1
XM_026940128.2 mRNA upstream 211380 6164767 ~ 6172156 (-) True ak5l
XM_026940155.2 mRNA upstream 218917 6172304 ~ 6175635 (-) True gpsm1a
XM_034299371.1 mRNA upstream 265418 6218805 ~ 6230283 (-) True LOC113542600
XR_004577106.1 other downstream 364321 5576620 ~ 5578981 (-) False LOC117595919
TU414705 other downstream 576292 5362282 ~ 5367010 (-) False LOC113542328
TU414706 other downstream 579020 5321513 ~ 5364282 (-) True G349951
TU414275 other downstream 1403471 4539283 ~ 4539831 (-) True G349584
XR_004577114.1 other downstream 2555572 3346155 ~ 3387730 (-) False trpm3
XR_004577154.1 other upstream 103594 6056981 ~ 6120959 (-) True pappab
XR_004577155.1 other upstream 103848 6057235 ~ 6120959 (-) False pappab
TU415368 other upstream 393508 6346895 ~ 6352372 (-) False LOC113542569
TU415778 other upstream 811527 6764914 ~ 6775149 (-) True G350867
XR_003403722.2 other upstream 1649872 7603259 ~ 7607466 (-) False card9

Expression Profile