Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_034299350.1 |
| length | 948 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 5 |
| gene id | LOC117595980 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047618.1 |
| NCBI id | CM018564.1 |
| chromosome length | 20251756 |
| location | 1236871 ~ 1240049 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0030163 | protein catabolic process | biological_process |
| GO:0009056 | catabolic process | biological_process |
| GO:1901565 | organonitrogen compound catabolic process | biological_process |
| GO:0009057 | macromolecule catabolic process | biological_process |
| GO:1901575 | organic substance catabolic process | biological_process |
| GO:0044248 | cellular catabolic process | biological_process |
| GO:0044257 | cellular protein catabolic process | biological_process |
| GO:0044265 | cellular macromolecule catabolic process | biological_process |
| GO:0006508 | proteolysis | biological_process |
| GO:0051603 | proteolysis involved in cellular protein catabolic process | biological_process |
| GO:0046980 | tapasin binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU412372 | lncRNA | downstream | 5030 | 1231235 ~ 1231841 (-) | True | G348003 |
| TU412347 | lncRNA | downstream | 59701 | 1174117 ~ 1177170 (-) | True | G347980 |
| TU412326 | lncRNA | downstream | 133987 | 1083752 ~ 1102884 (-) | True | G347963 |
| TU412231 | lncRNA | downstream | 163170 | 1056423 ~ 1073701 (-) | False | G347896 |
| TU412318 | lncRNA | downstream | 198674 | 1036539 ~ 1038197 (-) | False | G347955 |
| XR_004577150.1 | lncRNA | upstream | 24756 | 1264805 ~ 1266121 (-) | True | LOC117595969 |
| TU412376 | lncRNA | upstream | 24814 | 1264863 ~ 1284995 (-) | False | LOC117595969 |
| TU412260 | lncRNA | upstream | 28260 | 1268309 ~ 1271159 (-) | True | LOC113524981 |
| XR_004577145.1 | lncRNA | upstream | 69640 | 1309689 ~ 1311494 (-) | True | LOC117595965 |
| XR_004577144.1 | lncRNA | upstream | 98759 | 1338808 ~ 1339841 (-) | True | LOC113524984 |
| XM_034299256.1 | mRNA | downstream | 6223 | 1188924 ~ 1230648 (-) | False | tchp |
| XM_026911379.2 | mRNA | downstream | 6223 | 1188924 ~ 1230648 (-) | False | tchp |
| XM_026911382.2 | mRNA | downstream | 6223 | 1188924 ~ 1230648 (-) | True | tchp |
| XM_026911381.2 | mRNA | downstream | 42313 | 1188924 ~ 1194558 (-) | False | tchp |
| XM_034299300.1 | mRNA | downstream | 128223 | 1105920 ~ 1108648 (-) | True | LOC117595672 |
| XM_034299263.1 | mRNA | upstream | 11821 | 1251870 ~ 1257942 (-) | True | LOC117595953 |
| XM_034299311.1 | mRNA | upstream | 30086 | 1270135 ~ 1278867 (-) | False | LOC113524981 |
| XM_034299351.1 | mRNA | upstream | 53825 | 1293874 ~ 1297808 (-) | True | LOC117595981 |
| XM_034299352.1 | mRNA | upstream | 74450 | 1314499 ~ 1316387 (-) | True | LOC113528146 |
| XM_034299353.1 | mRNA | upstream | 110267 | 1350316 ~ 1420706 (-) | True | LOC113524983 |
| TU412323 | other | downstream | 157732 | 1076733 ~ 1079139 (-) | True | G347960 |
| XR_004577138.1 | other | downstream | 312248 | 864220 ~ 924623 (-) | False | LOC113527995 |
| TU411959 | other | downstream | 869136 | 364006 ~ 367735 (-) | True | LOC113528009 |
| XR_004577111.1 | other | downstream | 999599 | 230525 ~ 237272 (-) | False | LOC117595925 |
| TU412381 | other | upstream | 116519 | 1356568 ~ 1369462 (-) | False | LOC113524988 |
| XR_003404300.2 | other | upstream | 267566 | 1507615 ~ 1530394 (-) | False | LOC113542373 |
| XR_003404299.2 | other | upstream | 287543 | 1527592 ~ 1530388 (-) | False | LOC113542373 |
| XR_004577143.1 | other | upstream | 288729 | 1528778 ~ 1530394 (-) | False | LOC113542373 |
| trnak-uuu_19 | other | upstream | 358421 | 1598470 ~ 1598542 (-) | True | trnak-uuu_19 |
