RNA id: XM_034299353.1


Basic Information

Item Value
RNA id XM_034299353.1
length 3047
RNA type mRNA
GC content 0.47
exon number 18
gene id LOC113524983
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1350316 ~ 1420706 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGTGTGTTTCATGAAACTGGAACAAAAATCACTACGAACTGCTGGTTTAGCAAGTTATTCCGAAGTGTAGTTGTTGTGACCGCAGTAGCAGAAAGGAGAAAAGCTTTTACCAAGAAGATTCTCTACAGATTAATTCTGTTTAAGCTCTGCAGGAATGGAGCACAGATCCATTCACGTCCTTGTGGAAGTCCTGTTCTTCCTCACGATTAGTTTTCCTCGGGCATCTGCAGacacacactctctgcagTACCTCTACACTGCCGTCACACCAGGAATAAATTTCCCAGAGTTCACTGCTGTTGGTCTGGTGGACGGAGAGCAGTTTGTGTACTATGACAGCAACATCAGGAAGATGATCCCAAGGACAGAGTGGATAAATAAGATTGATGCTGATGATCCAGATTACTGGAACAGGCGAACACGTGAGATGCAGAGTCATCAGGAGAATCTGAAACAGCTCTTAGCTACAGTAATGCAACACTATAATCACGCTAAAGgAGTTCATATACTACAGTGGATGTACGGCTGTGAGCTCGATGATGACGGCACCACTAGAGGATACACTCAGTACGGTTATGATGGAGAAGATTTCATCACTTTTGATCTGAAAACTCTCACCTGGATCGCTCCGACACCTCAAGCTGTGATCACCAAACACAAGTGGGATGCTGACACTGGTCGGAATTATCAGTGGAAGAACTACCTGGAGAAAGAGTGTATCGAGTGGTTAAAGAAGTATGTGACTTACAGCAGAGAGACTCTGGAGAGGAAAGttcGTCCCGAGGTGTCAGTGTTCCAAAAGGACTCCACCTATCCAGAGGTGGTGTGTCATGCTACAGGTTTCTTCCCCAAAGCAGTGATGATCTCCTGGCAGGAGGACGGATGGGACACGTATGAGGACGTGGAGCTCAGAGAGACGTTACCCAACCTGGATGGAAGCTTCCAGAAGAGAAGCATTCTGACAGTCCCAGCTGAGGTGCTGCAGAAACACACCTACACCTGCGTGATTCAGCACAGCAGCTTGGAGAAGGAGTTAGTGCTGCCCGTGAGCGAGCGCCGAATCCTGAATCCTGGTTTGCTCTCAGAGCCTCTGGTCTCTTCAACTTTGGAGGCAGAAGCTGGAGATACTGTCACTATTTGGTGCCAACATAACCTGAATTATCGAGGTTCCATCTTCTGGTTTAAACACACGAGTGATTCAGTTCCACGTCTTCTTGGGTGCAAACAGATTTTTACATCAGCTGCATCATATCCGTGTTCCTACTTTACTGAAACTGAGCGCATGGTGATGGCTGTTCAGGGCAGATTCACGTCTCTCACAATCACTGCAGTAAATGTCTCTGATACAGGACTCTATTACTGCAGCTCCATGCAAATGGACCGAATTAACTTTAGCAACTCGACCTCTTTCCATGTGAAAGACAGAAACAAAATACTTTCTGAGAACTTGGACAGAGCGACagGTTCAGTCTCTTCTGCTGTGTTCTTCATGCTGACTGTGGTGTTTGGTGTAGTGATTGTGATTCTTCTCGCTGTCCTGATCTTCACcatgctgaagaaaaaaacatacagaggtgTTGAGGCAGAAGATAATATGGCTCGTGCAGTTCTGAAAGCTCTGATTTTCCTCACAGtttctcttcatctttcatCAGCAGtcacacactctctgCAGTACATCTACACTGCAGTTACAGGAATAAATTTCCCAGAATTCACTGCTGTGGGTCAGGTGGATGGAGAGCAGTTTAGCTACTACGATAGTAACATCAGGCGAGAGACGCCGAAGACGGAGTGGATACAGAAGATCAACGCTGAGGATCCAGATTACTGGAGCAGAAATACACAGAAGCAGCAGGGTGCTCAGGAGGTCTACAGAGTCAATGTGGCTACAGCAATGCAGCGCTTTAACCAGACTAAAggagttcACACAGTGCAGATGATGTGCGGCTGGCGTGATGATGACGGCACCACTAGAGGATACACTCAGTGCGGTTATGATGGAGAAGATTTCCTCAGTCTGGATCTGAAAACTAAAACCTGGATTGCAGCTAAACCTCAAGCTGTGATCACCAAACACAAGTGGGATTCTACAGGAGCTGAGGCTAATGACATGAAGAACTACCTGCAGAACACCTGTATCAAGTGGTTAAAGAAGTACGTGTCTTACGGCAGAGAGACTCTGGAGAGGAAAGttcGGCCCGAGGCTTCACTGTTCCAGAAACACTCTCCTTCTGCAGAGGTGGTGTGTCATGCTACAGGTTTCTTCCCCAAAGCAGTGGTGATCTCCTGGCAGAAGGACGGAGAGGAGGTGCATgagaatgtggagctcagagagACGTTACCCAACCAGGATGGAAGCTTCCAGAAGAGAAGCATTCTGACAGTTCCAGCTGAGGAGCTGCAGAAACACACCTACACCTGCGTGATTCAGCACAGCAGCTTGGAGAAGGAGTTAGTGCTGCCTGTGAGAGTTCCAGATAGAGAATCAGGTTTGCTCTCAGAGCCTCTGGTCTCTTCAACTTTGGAGGCAGAAGCTGGAGATACTGTCACTATTTGGTGCCAACATAACCTGAATTATCGAGGTTCCATCTTCTGGTTTAAACACACGAGTGATTCAGTTCCACGTCTTCTTGGGTGCAAACAGATTTTTACATCAGCTGCATCATATCCGTGTTCCTACTTTACTGAAACTGAGCGCATGGTGATGGCTGTTCAGGGCAGATTCACGTCTCTCACAATCACTGCAGTAAATGTCTCTGATACAGGACTCTATTACTGCAGCTCCATGCAAATGGACCGAATTAACTTTAGCAACTCGACCTCTTTCCATGTGAAAGACAGAAACAAAATACTTTCTGAGAACTTGGACAGAGCGACagGTTCAGTCTCTTCTGCTGTGTTCTTCATGCTGACTGTGGTGTTTGGTGTAGTGATTGTGATTCTTCTCGCTGTCCTGATCTTCACcatgctgaagaaaaaaacatacagaggtgTTGAGGCAGAAGATAATTAGGTAACTCTGAGACTCAAAACCAAAAAGGAG

Function

GO: NA

KEGG:

id description
K06751 MHC1; MHC class I antigen

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577144.1 lncRNA downstream 10475 1338808 ~ 1339841 (-) True LOC113524984
TU412370 lncRNA downstream 15379 1227126 ~ 1334937 (-) True G348001
XR_004577145.1 lncRNA downstream 38822 1309689 ~ 1311494 (-) True LOC117595965
TU412376 lncRNA downstream 65321 1264863 ~ 1284995 (-) False LOC117595969
TU412335 lncRNA downstream 73103 1095034 ~ 1277213 (-) True G347969
TU412244 lncRNA upstream 27108 1447814 ~ 1467707 (-) False G347896
TU412270 lncRNA upstream 75704 1496410 ~ 1496871 (-) True G347916
TU412386 lncRNA upstream 107019 1527725 ~ 1530278 (-) False LOC113542373
XR_004577149.1 lncRNA upstream 162014 1582720 ~ 1605702 (-) True LOC117595968
TU412255 lncRNA upstream 211485 1632191 ~ 1638134 (-) True G347901
XM_034299352.1 mRNA downstream 33929 1314499 ~ 1316387 (-) True LOC113528146
XM_034299351.1 mRNA downstream 52508 1293874 ~ 1297808 (-) True LOC117595981
XM_034299311.1 mRNA downstream 71449 1270135 ~ 1278867 (-) False LOC113524981
XM_034299263.1 mRNA downstream 92374 1251870 ~ 1257942 (-) True LOC117595953
XM_034299350.1 mRNA downstream 110267 1236871 ~ 1240049 (-) True LOC117595980
XM_026911400.2 mRNA upstream 4393 1425099 ~ 1431481 (-) True LOC113524989
XM_034299283.1 mRNA upstream 12300 1433006 ~ 1442192 (-) True LOC113528310
XM_034299266.1 mRNA upstream 29629 1450335 ~ 1710902 (-) True LOC117595719
XM_026939866.2 mRNA upstream 84933 1505639 ~ 1530394 (-) False LOC113542373
XM_026939867.2 mRNA upstream 84933 1505639 ~ 1530394 (-) True LOC113542373
TU412230 other downstream 52410 1157791 ~ 1297906 (-) False G347896
TU412323 other downstream 271177 1076733 ~ 1079139 (-) True G347960
XR_004577138.1 other downstream 425693 864220 ~ 924623 (-) False LOC113527995
TU411959 other downstream 982581 364006 ~ 367735 (-) True LOC113528009
XR_004577112.1 other downstream 1113952 230525 ~ 236364 (-) True LOC117595925
XR_003404300.2 other upstream 86909 1507615 ~ 1530394 (-) False LOC113542373
XR_003404299.2 other upstream 106886 1527592 ~ 1530388 (-) False LOC113542373
XR_004577143.1 other upstream 108072 1528778 ~ 1530394 (-) False LOC113542373
trnak-uuu_19 other upstream 177764 1598470 ~ 1598542 (-) True trnak-uuu_19
TU412500 other upstream 407192 1827898 ~ 1828645 (-) True G348096

Expression Profile