RNA id: XM_034299371.1


Basic Information

Item Value
RNA id XM_034299371.1
length 2057
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC113542600
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 6218805 ~ 6230283 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGATATCACTGAGTCGTAACATTTTCTCAGAAAAGTTATCTGAGGCGAAATGGAGGCTGTCCACGTTTGGGATTGTTGCTCTGGATGGTTCAGGAGCAGGTGCTGGAGGAAGTGGACATGTCCCAGTCTCCTCAGAGGCCTACAGACATCTGCAGAGGAAAAAGACTGAATTACATAAACTTAAAATGGCTGTTGGGGAATTTTATCTGAGTCTGGCGTTTCTCCAGAGCTACCAGGAGCTGAACTACCAAGCATTGAATGAATCACATCTAGAGCAACTGAAGCCACTGCTACAACTCTACAGAGGGAGTTTTCTGCTGATCGAGTTCCTGTCACTGATGGGATTATCCATGTATTGCTGGAGAAGATCTGGAATCAATCACATTCTCATTTTTGAGCTGGATCCTAGACATCACTTATCACATCATCACGTTTTAGAGGTGGCAGGATACTTGGCTGTATGTTGTTGTATTAGTGTGTTGGCCTGGCTACATCCTTCATTCATGTCAATCCCACAACAGCTCCACCCCCTTTTATTCCACAGTCTTTTGCTGTTCTTGCTGTTAAACCCCACATCTACTTGTCACTCTGGGTCTCGTCACTGGTTTCTTGCTGTGATGTGGAAGGTCCTGACAGCACCTCTCTGGCCTGTTGGGTTTGCAGATTGCTGGCTGGCTGACCAGCTCAACAGTCTGAGTCCTGTTATCTTGAGCCTGTGGGACCTGCTGTGCTTCTACACCTTTCAGATAAACTGGGCAGATCTGCAGGATGGCAGCTCTCTGGTTAGAGAGAGTGTGGACTGGGAAAGGCAGAGCAAAATAGTCATATGTCTGATTCAATGCTTCCCTCCATGGCTGAGGTTTGCTCAGTGTCTTAGAGACTTCTGGGACAGTGGAAACACAGTGCATCTCCTTAATGCTGGCAAATACTCCACTGTCTTTCTCATGGTCACATTTGCAGGTCTCTACAACACAGCAAGAGAGAAGTCTGATCCGGCCATGGaggagagtgtgtatgtgtatctgtacCTGTGGGCCATGTCTACCTGCATAAGTGTAATAGTGACTGTGAGCTGGGACCTAAGGATGGACTGGGGACTGCTGCAAGGAAATGGACTTCTGAAAGAGGAGCTACTTTACTCCCGAGAgGTGTATTACTATGCAGCCATGTTAGCAGATGTGCTACTGCGGATCTCTTGGGCTATTAATATCCTCTTGGCTCAGATGAAGGATTCAGCTGCTGTTGTTACTGCTAGTGCCATACTGGCTCCACTGGAGGTCCTCAGGCGTTCAATCTGGAATTTCTTTCGCCTGGAAAATGAGCACCTGAAAAACTGCAGACAGTGTCGAGCCATTCgtgattttaataatagtcCAATAAACCTGCCACAGCAGATCCTCATTGAGAAGCTGAAGGACCCAAATGAGCAGATTACTGGCCAACAGGAAACCAGTACCTCACACCGTAAACCTACTTGTTTACTATTTAGATATCTAAGatCAAGAGTTAAGGAAACAAACTTACCAGTAGAGAGCCCAGAGATGGAGTCAACGTAATGTTTATAAGGATGAAAAAGGAGCCCTTAAAATGGGCGCACACATAAATGTTGATTAGGTGCTTAGTCAGCAAGGTAAAATGTCATGATTACAGTCCCCATGTGTAATATATGAAGAAGCAGTACCAATATTTCCCTCAAAATAATACTTTCCTTTATTTCACTTCAAAATCCACCAGTAATTCAATTTTCCAGACCAGCTGATATGCAAAAATCAGGCAAGCATGTACAATACAGCAGCTTGAGCCCAAGcgaataaagaggaaaaaagagcatGGGAGGAGAAAGTGAGAGTCCAGCATTTCTCTCTCCAGAGAACTGATGTTCTCTGTTCTGCTTCCTACTCTGTGTTCAAGTCAGCAGTCCCACagtcagctgttttttttaaataaagtatctCTATGCTTTCCTCCTGTTATAGTCCAAACCCAGCAGTATAGCTTTGATATCTGAAGCAATGCACATATGTTGTGTTAATGAACAGGTTCAGCTTTTTTTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577159.1 lncRNA downstream 276973 5938466 ~ 5941832 (-) True LOC117595975
TU415047 lncRNA downstream 277162 5941297 ~ 5941643 (-) False LOC117595975
TU414888 lncRNA downstream 488085 5730462 ~ 5730720 (-) True G350114
XR_004577085.1 lncRNA downstream 508331 5707923 ~ 5710474 (-) True LOC117595899
TU414864 lncRNA downstream 528036 5690361 ~ 5690769 (-) True G350090
TU415366 lncRNA upstream 78849 6309132 ~ 6310450 (-) True G350513
XR_003404315.2 lncRNA upstream 116380 6346663 ~ 6352343 (-) True LOC113542569
XR_004577094.1 lncRNA upstream 152821 6383104 ~ 6388571 (-) True LOC117595904
TU415571 lncRNA upstream 464572 6694855 ~ 6695063 (-) True G350664
TU415621 lncRNA upstream 512110 6742393 ~ 6742602 (-) True G350714
XM_026940155.2 mRNA downstream 43170 6172304 ~ 6175635 (-) True gpsm1a
XM_026940128.2 mRNA downstream 46649 6164767 ~ 6172156 (-) True ak5l
XM_034299318.1 mRNA downstream 57172 6160872 ~ 6161633 (-) True cmlc1
XM_026940114.2 mRNA downstream 97846 6059271 ~ 6120959 (-) False pappab
XM_034299317.1 mRNA downstream 265418 5943302 ~ 5953387 (-) True ciz1b
XM_026939677.2 mRNA upstream 5837 6236120 ~ 6239812 (-) False fam78aa
XM_026939676.2 mRNA upstream 5837 6236120 ~ 6239812 (-) True fam78aa
XM_034299211.1 mRNA upstream 20648 6250931 ~ 6267587 (-) False brd3b
XM_026939939.2 mRNA upstream 20648 6250931 ~ 6267177 (-) False brd3b
XM_026939945.2 mRNA upstream 20648 6250931 ~ 6267177 (-) False brd3b
XR_004577154.1 other downstream 97846 6056981 ~ 6120959 (-) True pappab
XR_004577155.1 other downstream 97846 6057235 ~ 6120959 (-) False pappab
XR_004577106.1 other downstream 639824 5576620 ~ 5578981 (-) False LOC117595919
TU414705 other downstream 851795 5362282 ~ 5367010 (-) False LOC113542328
TU414706 other downstream 854523 5321513 ~ 5364282 (-) True G349951
TU415368 other upstream 116612 6346895 ~ 6352372 (-) False LOC113542569
TU415778 other upstream 534631 6764914 ~ 6775149 (-) True G350867
XR_003403722.2 other upstream 1372976 7603259 ~ 7607466 (-) False card9
TU417110 other upstream 2350617 8580900 ~ 8585926 (-) False malt1
XR_004577119.1 other upstream 2810523 9040806 ~ 9049408 (-) False LOC113536894

Expression Profile