RNA id: XM_034299412.1


Basic Information

Item Value
RNA id XM_034299412.1
length 2389
RNA type mRNA
GC content 0.54
exon number 18
gene id ncaph
representative False

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 2201716 ~ 2209741 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATAGGAGTTAGCGGAGTTACTCGCCTGTGTGTGGTTTAGTTCCGttgtttacagaaaattaaagatttttttttgataaatttgttttaattctcAATAAGTAATCGGATATTCATTACCAAGTTGCGCTATTGATTACAGCAGCATGAGTGTGGTGAGCACCCCGACTTCCCGGCCACGGCAGTGGTCCTCTCCGGCGCTGGGGCACAAAACGGCCCTCTCGGCCACCAGCACGCCGCTTCTCGGATCCATCCAAAGCAACGACGATGAGCAGGAGCGAAGGCAGAGGCGCAGGTCCAGAGTCATCGACCTTCACGCAGGGGCCGACTCCTCCATCAACGAGGGCTACAGCACAGGAACTCCTGCTGCCGTGCCCAAGCTTTCCTCTGCGCAGATCTCGGAGCATTACTCCACCTGCATCAAGCTCTCGACGGAAAACAAAATTACCACGAAGAACGCGTTTGGTCTGCACCTCATCGATTACATGGCGGACATTCTCAAGCAGAAAGACTCCGAGCTCAACTTCAAGgtggctGCAGGGACGCTGGACGCCAGCACTAAGATCTATGCCGTGAGGGTGGACGCGGTACACGCTGATGCCTACAGAGTTCTGGGAGGCCTGGGCTCCGAGACCAAACCGaaagatgGCCAGGAGGCAGGAGAAGACGTGGAGGCGGCAGACGGCAGTGTGAGTGAACAGGCAGCCACCAAGCAGGCCCCAAAGAAACGGCCTCCGAAGAAGACGGTGGAGCAGAACCTGAGCAACATCAACCTCTCGGAGTCGGAGATGAAGTGTGAGGTGGACCCCATGTTCCAGCGCATGGCCGCGTCTTTCGATGAGAACAGTACAGCCGGAGTGTTTCTGTCCGTGCTGTTCAGTGAGGACAGCCGCTGTGAGCTCCGGTTCCCCTCCCACATGACCCTGCTGCACTCCagaccagccagctctccctcACCTGTACAGCACACACCTGCCTCACCCTTCACAGTTAGTTTAAAGACTCTGGAGGAAAAGATGCCCGTCTGCCCGTCTCTAGAAGATTTCTCCTTCACCcagtggacacctgaccagACGACCAACCTGAACCAGCTGCTGGAGAAGATGAAGCAGGGCGAGCACGCGTTTGACGTCAACGCCGAAATCGAGCCGGACGAGTGCGAGGCGCCGGATTTCGAGGACCATTTCGATGCGGACGGAGACGACAGAGGAGAGGGACAGTGCGGGGATCCCTTCGACGAGCACAAAGACGCCTGCTCTAGGAGGAGCCCCGAGAAAGGGCGAGGGATTATCCCGATCGGAGAAGGCGACATCACCACCATGTGCCTGCAGCTGTCAGACAAACCCAGAGAGTATTCGTACTTCAGCCCCCGCACCATGGCGACGTGGGTCGGCCCGGGATACTGGCTCTtcaaacccacacacaaacAGGATCACAAGCCGGAGAAGGAAACCAAAAAGCGAGCGCCGAAAAGTGCCCTGGTGATCGACTTCAGCGAGGACGTCCACTTTCACAACTACTTCCGCACAACCAGAGCAGCGACCACCATCAGTAAATCTGCCCTGAACACCAGCAACAAGAAAACGACGCTGCCGGCAGATTTCCAGTATCCGCTCAGCAACCTGTCGCAGCTCAGCCTCAAACCTGCCAGCACGCTGATTGTAAAAGACAAGAAGAGGATATCAGGTGAGCTAGCCGAGGACATTGGAGAGTACGACTATAACAACGCTAATGACACTGCTAACTTCTGCCCACggctgcagCTCGAGGACAGCGATGATGAGGTCGAAGGCTTCGCGGGATCGGATGACTCTCAGCCCGTGACGGACAGACTGGACGCCGACGGCGTCTCCACATACGGAGAAGACTGCCTGGTGCCCGAGCCGTATAAAGTCAACATCATTGAGATTAATTACGCCAAAACAGCCAAGAAGATGGACATGAAGCGCCTGAAGAGCAGCATGTGGAGCCTCCTGACAGACAGCCCTGAGAAACCAGCCATGgttgcTGAGAGCGAGAAGCCTACAGAAGTCCCAGGAGAGAAATCCTTCAGCCAGTCCACCAGGACGCTCTTACAAAAGCTCCCCAGCACCATGGCCAGTAACCTGTCTGTGCCCTTGGCCTTCGTCGCTCTCCTGCATCTGGCCAATGAGAAGAACCTGGAGCTTCACAAAGTGGACGACATGTCggacatcatcatcaaacaaGGACACTGAGGACACGCCCACGCCACcggattattattttttttagtgttttaagggagtattatttttttagagcagtttttacagtgtacagtatgttttattCCACATGTGTGGAGCCtctattttacagtaaatagtGTTTCCTCTGGTgcaattttgtaataaaaattttaaccGTGA

Function

GO:

id name namespace
GO:0007076 mitotic chromosome condensation biological_process
GO:0000796 condensin complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412614 lncRNA downstream 19856 2111663 ~ 2181860 (-) True G348180
TU412635 lncRNA downstream 59614 2141616 ~ 2142102 (-) True G348200
TU412579 lncRNA downstream 167852 2033557 ~ 2033864 (-) True G348147
TU412516 lncRNA downstream 180581 1982054 ~ 2021135 (-) False arvcfb
TU412574 lncRNA downstream 214669 1986183 ~ 1987047 (-) True G348143
XR_004577113.1 lncRNA upstream 32467 2242208 ~ 2242816 (-) True LOC117595926
TU412672 lncRNA upstream 96384 2306125 ~ 2308604 (-) True G348233
TU412719 lncRNA upstream 191116 2400857 ~ 2401493 (-) True G348264
TU412721 lncRNA upstream 191292 2401033 ~ 2401493 (-) False G348264
TU412742 lncRNA upstream 213974 2423715 ~ 2424331 (-) True G348283
XM_026939754.2 mRNA downstream 2165 2191585 ~ 2199551 (-) True vamp8
XM_026940205.2 mRNA downstream 15636 2179539 ~ 2186080 (-) True LOC113542580
XM_026940204.2 mRNA downstream 23657 2175537 ~ 2178059 (-) False LOC113542514
XM_034298933.1 mRNA downstream 23903 2169335 ~ 2177813 (-) True LOC113542514
XM_026940098.2 mRNA downstream 28775 2169335 ~ 2172941 (-) False LOC113542514
XM_034299099.1 mRNA upstream 43240 2252981 ~ 2282993 (-) False tacr1a
XM_026939880.2 mRNA upstream 43240 2252981 ~ 2282992 (-) True tacr1a
XM_026940273.2 mRNA upstream 147530 2357271 ~ 2363155 (-) True ogfod2
XM_026940243.2 mRNA upstream 225583 2435324 ~ 2458405 (-) True LOC113542614
XM_026940065.2 mRNA upstream 255831 2465572 ~ 2482183 (-) True LOC113542490
TU412644 other downstream 15772 2179543 ~ 2185944 (-) False LOC113542580
TU412577 other downstream 203246 1995902 ~ 1998470 (-) True G348145
TU412500 other downstream 373071 1827898 ~ 1828645 (-) True G348096
trnak-uuu_19 other downstream 603174 1598470 ~ 1598542 (-) True trnak-uuu_19
XR_004577143.1 other downstream 671322 1528778 ~ 1530394 (-) False LOC113542373
TU412757 other upstream 428014 2637755 ~ 2664375 (-) False zmat4a
TU412979 other upstream 574936 2784677 ~ 2785896 (-) True G348491
XR_004577129.1 other upstream 605117 2814858 ~ 2964889 (-) False unc5db
XR_003404311.2 other upstream 946301 3156042 ~ 3166254 (-) False tm2d2
XR_004577114.1 other upstream 1136414 3346155 ~ 3387730 (-) False trpm3

Expression Profile