RNA id: XR_004577125.1


Basic Information

Item Value
RNA id XR_004577125.1
length 356
lncRNA type inter_gene
GC content 0.57
exon number 3
gene id LOC117595935
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 826664 ~ 829841 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTTGGTTCTCGAACTCGGACCAGGCATCATTCAGCTCCATGAAGATCATCTTGGCGTACTGCTCGTACGGCTGCCCCGCCGCCTGgacaaccacaaccacaaccacaGCAATGAGAGGATGTGGCCTGGTGATGCTGAGCACGTTTGGCTGAGCTGAGGAACGCTGAGGAACGCTGAGGAACGCTGAGGAACGCTGAGGAACGCTGAGGAACCTGGGGTCACTCAGACTTCCTGAGgtgattCTGACCTGGCAGAGTGGAGCCCAGGTTACCGAGGTCAGCGAAGGGGTCAAAGCTCTGAGACTTGGCCTTCGAGAAGGACGAGGACACACCTggagctaacacacacacacaca

Function

GO:

id name namespace
GO:0043227 membrane-bounded organelle cellular_component

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03460 Fanconi anemia pathway
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412178 lncRNA downstream 60068 766065 ~ 766596 (-) True G347868
TU412173 lncRNA downstream 61296 763323 ~ 765368 (-) True G347866
TU412171 lncRNA downstream 69328 757033 ~ 757336 (-) True G347864
TU412163 lncRNA downstream 80449 742817 ~ 746215 (-) False G347859
XR_004577124.1 lncRNA upstream 969 830810 ~ 837338 (-) False LOC117595934
TU412034 lncRNA upstream 1142 830983 ~ 832930 (-) True G347758
TU412047 lncRNA upstream 3522 833363 ~ 834896 (-) True LOC117595934
TU412274 lncRNA upstream 87760 917601 ~ 924667 (-) False LOC113527995
TU412216 lncRNA upstream 89543 919384 ~ 1389230 (-) False G347896
XM_034299169.1 mRNA downstream 167766 652989 ~ 658898 (-) False pgam5
XM_034299168.1 mRNA downstream 167766 652989 ~ 658898 (-) True pgam5
XM_026917111.2 mRNA downstream 249228 523807 ~ 577436 (-) True LOC113528517
XM_034299346.1 mRNA downstream 310392 475494 ~ 516272 (-) True LOC113528156
XM_034299077.1 mRNA downstream 370574 440336 ~ 456090 (-) False atp8b5a
XM_026916266.2 mRNA upstream 7720 837561 ~ 844476 (-) False LOC113528030
XM_026916264.2 mRNA upstream 7720 837561 ~ 841880 (-) True LOC113528030
XM_026916267.2 mRNA upstream 7720 837561 ~ 841054 (-) False LOC113528030
XM_026916212.2 mRNA upstream 19545 849386 ~ 851691 (-) True tal2
XM_034299228.1 mRNA upstream 26939 856780 ~ 924649 (-) False LOC113527995
TU411959 other downstream 458929 364006 ~ 367735 (-) True LOC113528009
XR_004577111.1 other downstream 589392 230525 ~ 237272 (-) False LOC117595925
XR_004577112.1 other downstream 590300 230525 ~ 236364 (-) True LOC117595925
TU411849 other downstream 616022 206493 ~ 210642 (-) False LOC113528266
XR_004577138.1 other upstream 34379 864220 ~ 924623 (-) False LOC113527995
TU412323 other upstream 246892 1076733 ~ 1079139 (-) True G347960
TU412226 other upstream 327950 1157791 ~ 1410675 (-) False G347896
TU412230 other upstream 327950 1157791 ~ 1297906 (-) False G347896
TU412381 other upstream 526727 1356568 ~ 1369462 (-) False LOC113524988

Expression Profile