Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004577145.1 |
| length | 436 |
| lncRNA type | inter_gene |
| GC content | 0.39 |
| exon number | 4 |
| gene id | LOC117595965 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047618.1 |
| NCBI id | CM018564.1 |
| chromosome length | 20251756 |
| location | 1309689 ~ 1311494 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU412376 | lncRNA | downstream | 24694 | 1264863 ~ 1284995 (-) | False | LOC117595969 |
| TU412335 | lncRNA | downstream | 32476 | 1095034 ~ 1277213 (-) | True | G347969 |
| TU412260 | lncRNA | downstream | 38530 | 1268309 ~ 1271159 (-) | True | LOC113524981 |
| XR_004577150.1 | lncRNA | downstream | 43568 | 1264805 ~ 1266121 (-) | True | LOC117595969 |
| TU412372 | lncRNA | downstream | 77848 | 1231235 ~ 1231841 (-) | True | G348003 |
| XR_004577144.1 | lncRNA | upstream | 27314 | 1338808 ~ 1339841 (-) | True | LOC113524984 |
| TU412383 | lncRNA | upstream | 90362 | 1401856 ~ 1402831 (-) | True | G348011 |
| TU412384 | lncRNA | upstream | 97467 | 1408961 ~ 1463632 (-) | True | G348012 |
| TU412244 | lncRNA | upstream | 136320 | 1447814 ~ 1467707 (-) | False | G347896 |
| TU412270 | lncRNA | upstream | 184916 | 1496410 ~ 1496871 (-) | True | G347916 |
| XM_034299351.1 | mRNA | downstream | 11881 | 1293874 ~ 1297808 (-) | True | LOC117595981 |
| XM_034299311.1 | mRNA | downstream | 30822 | 1270135 ~ 1278867 (-) | False | LOC113524981 |
| XM_034299263.1 | mRNA | downstream | 51747 | 1251870 ~ 1257942 (-) | True | LOC117595953 |
| XM_034299350.1 | mRNA | downstream | 69640 | 1236871 ~ 1240049 (-) | True | LOC117595980 |
| XM_026911379.2 | mRNA | downstream | 79041 | 1188924 ~ 1230648 (-) | False | tchp |
| XM_034299352.1 | mRNA | upstream | 3005 | 1314499 ~ 1316387 (-) | True | LOC113528146 |
| XM_034299353.1 | mRNA | upstream | 38822 | 1350316 ~ 1420706 (-) | True | LOC113524983 |
| XM_034299285.1 | mRNA | upstream | 47064 | 1358558 ~ 1369432 (-) | True | LOC113524988 |
| XM_026911400.2 | mRNA | upstream | 113605 | 1425099 ~ 1431481 (-) | True | LOC113524989 |
| XM_034299283.1 | mRNA | upstream | 121512 | 1433006 ~ 1442192 (-) | True | LOC113528310 |
| TU412230 | other | downstream | 11783 | 1157791 ~ 1297906 (-) | False | G347896 |
| TU412323 | other | downstream | 230550 | 1076733 ~ 1079139 (-) | True | G347960 |
| XR_004577138.1 | other | downstream | 385066 | 864220 ~ 924623 (-) | False | LOC113527995 |
| TU411959 | other | downstream | 941954 | 364006 ~ 367735 (-) | True | LOC113528009 |
| XR_004577111.1 | other | downstream | 1072417 | 230525 ~ 237272 (-) | False | LOC117595925 |
| TU412381 | other | upstream | 45074 | 1356568 ~ 1369462 (-) | False | LOC113524988 |
| XR_003404300.2 | other | upstream | 196121 | 1507615 ~ 1530394 (-) | False | LOC113542373 |
| XR_003404299.2 | other | upstream | 216098 | 1527592 ~ 1530388 (-) | False | LOC113542373 |
| XR_004577143.1 | other | upstream | 217284 | 1528778 ~ 1530394 (-) | False | LOC113542373 |
| trnak-uuu_19 | other | upstream | 286976 | 1598470 ~ 1598542 (-) | True | trnak-uuu_19 |
