RNA id: XR_004577149.1


Basic Information

Item Value
RNA id XR_004577149.1
length 989
lncRNA type intronic
GC content 0.40
exon number 3
gene id LOC117595968
representative True

Chromosome Information

Item Value
chromosome id NC_047618.1
NCBI id CM018564.1
chromosome length 20251756
location 1582720 ~ 1605702 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCTGTGTATAAAGTAAAACAGCAAATTAGTGCTATTTAAATTTActcttttaaaaaagttttgcaTTGAAGTTACAAGGCGAATGGAAGCTTGTGAGCACCAATAATGTGGTTATTATGCTAACCACATGAATTAATTACCACACCCCagcaatattattttaaaatgattacattttgaaatacaatttttaagAACAGAAACATGGAAGTGAAGTCAAGTCAAACGATTCTggattcaaaatggctgccagcAGAGTTTACATGGACATTTGCTCATTATAGATGAGTAAAAGGTATGATGGTGGCAAATTCTGTGCCAAAAATCTGAGtgcaaatcatttttctttttgccagcagtgggaaaaaaactcaaatgTCCTCAACCTCAGACCTCAAAACTCAAATATCATTGCCTAATTCATTTTTCCGGAAATCAGTGCTGACTGGCTGCGTGCCACTGTGACGCACCATTGGCGGAGTTACCTGTTCTTCATCAGAGGCATGActtcatcaacacacactcttcatGTCCTGAACTGATAAAAGGCAGAGGGCAGATGTGAATTTGCTGCCCTAAACTTGGACTCAAACAGCACCACTGGAGCATACAGACTAGCAGAAACACAGTTAAGGCCACACTGTAAACGATCTCCTACAGAGCCGTTCATCAGCTGATTGGGCGTCCACTTCAGCGCCATGGTGTCGGCGGTCTGGTGCAGAGACAGGTATCCTGGGATCGCCTCCATGTCGTCTCTCTACATGAACAACAACAAGCTGCCATGTCAAGAAACGCCAACATTTTCAAGTAGCAAAAGATCTAAAGATGTATAAAGCCAACAAATAGCATTCTTGCTAATGTTAATGCTTCACTGCACTAAAAAAACATAGACATCACCTTTACTTTtccattattaatcattttgtgTGTGACGGGGGGATAGAGACCTTCTGACAGATGGTTCAGCTTACATAATAGATATgatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU412386 lncRNA downstream 52442 1527725 ~ 1530278 (-) False LOC113542373
TU412270 lncRNA downstream 85849 1496410 ~ 1496871 (-) True G347916
TU412225 lncRNA downstream 115013 925489 ~ 1467707 (-) True G347896
TU412223 lncRNA downstream 115013 961551 ~ 1467707 (-) False G347896
TU412244 lncRNA downstream 115013 1447814 ~ 1467707 (-) False G347896
TU412255 lncRNA upstream 26489 1632191 ~ 1638134 (-) True G347901
TU412446 lncRNA upstream 40976 1646678 ~ 1710908 (-) False LOC117595719
TU412445 lncRNA upstream 86225 1691927 ~ 1710908 (-) False LOC117595719
TU412452 lncRNA upstream 87441 1693143 ~ 1795534 (-) True G348067
TU412466 lncRNA upstream 128204 1733906 ~ 1859612 (-) True G348079
XM_026939849.2 mRNA downstream 24196 1535595 ~ 1558524 (-) True slc6a4b
XM_026939866.2 mRNA downstream 52326 1505639 ~ 1530394 (-) False LOC113542373
XM_026939867.2 mRNA downstream 52326 1505639 ~ 1530394 (-) True LOC113542373
XM_034299296.1 mRNA downstream 70378 1505640 ~ 1512342 (-) False LOC113542373
XM_034299297.1 mRNA downstream 70433 1505639 ~ 1512287 (-) False LOC113542373
XM_034299267.1 mRNA upstream 95350 1701052 ~ 1710902 (-) False LOC117595719
XM_034299265.1 mRNA upstream 95611 1701313 ~ 1710902 (-) False LOC117595719
XM_034299290.1 mRNA upstream 280950 1886652 ~ 1892126 (-) True fam151b
XM_026939781.2 mRNA upstream 280950 1886652 ~ 1892125 (-) False fam151b
XM_026939782.2 mRNA upstream 280950 1886652 ~ 1892124 (-) False fam151b
XR_003404300.2 other downstream 52326 1507615 ~ 1530394 (-) False LOC113542373
XR_004577143.1 other downstream 52326 1528778 ~ 1530394 (-) False LOC113542373
XR_003404299.2 other downstream 52332 1527592 ~ 1530388 (-) False LOC113542373
TU412226 other downstream 172045 1157791 ~ 1410675 (-) False G347896
TU412381 other downstream 213258 1356568 ~ 1369462 (-) False LOC113524988
TU412500 other upstream 222196 1827898 ~ 1828645 (-) True G348096
TU412577 other upstream 390200 1995902 ~ 1998470 (-) True G348145
TU412644 other upstream 573841 2179543 ~ 2185944 (-) False LOC113542580
TU412645 other upstream 573841 2179543 ~ 2231567 (-) False LOC113542580
TU412757 other upstream 1032053 2637755 ~ 2664375 (-) False zmat4a

Expression Profile