RNA id: TCONS_00008482


Basic Information

Item Value
RNA id TCONS_00008482
length 388
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id XLOC_004235
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 33992033 ~ 33993147 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACATTTTCATGCACGTGCATAAGCAGgaagaattttattattatatatatatttttaaagatttgttaCTGTTATGGAGTCTGTCTTACATAATATCTTTTCAAAAACCATTACTTCTCTTCTCAAATGTTTAAAGTCCATCCATTCTACCTTTAGTACATCAGTAgtagCTATGTGTTGGATGGTAGTGATCCAGTATTGTAAGATGATAAACACTTTTATGGACATGTAAAAGCAGGCAGGTTTTTTTTCCTCAAGGATTTGTTAGTGCCTTACTCatatcttttaaaaaacattacttCTCTTCTCAAATGTATATGAAGTGCAACCTAGAATGTATTGTATGTTGTTAAGGTCATTTGTGGTCAGGGATTCTGTAGATTGGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008832 lncRNA downstream 303084 33676834 ~ 33688949 (-) True XLOC_004229
TCONS_00008831 lncRNA downstream 306122 33676834 ~ 33685911 (-) False XLOC_004229
TCONS_00008481 lncRNA downstream 590557 33344982 ~ 33401476 (-) False XLOC_004227
TCONS_00008830 lncRNA downstream 590645 33305132 ~ 33401388 (-) False XLOC_004227
TCONS_00008829 lncRNA downstream 609200 33305132 ~ 33382833 (-) False XLOC_004227
TCONS_00008099 lncRNA upstream 227203 34220350 ~ 34225557 (-) False XLOC_004242
TCONS_00008100 lncRNA upstream 229746 34222893 ~ 34225798 (-) True XLOC_004242
TCONS_00008101 lncRNA upstream 256309 34249456 ~ 34255220 (-) True XLOC_004243
TCONS_00008833 lncRNA upstream 322378 34315525 ~ 34358689 (-) True XLOC_004244
TCONS_00008834 lncRNA upstream 557700 34550847 ~ 34577001 (-) False XLOC_004249
TCONS_00008087 mRNA downstream 31715 33921358 ~ 33960318 (-) True XLOC_004233
TCONS_00008085 mRNA downstream 72724 33870357 ~ 33919309 (-) False XLOC_004232
TCONS_00008086 mRNA downstream 73019 33873621 ~ 33919014 (-) True XLOC_004232
TCONS_00008084 mRNA downstream 123125 33864502 ~ 33868908 (-) True XLOC_004231
TCONS_00008082 mRNA downstream 123147 33861177 ~ 33868886 (-) False XLOC_004231
TCONS_00008089 mRNA upstream 3379 33996526 ~ 34065718 (-) True XLOC_004236
TCONS_00008090 mRNA upstream 91385 34084532 ~ 34097418 (-) False XLOC_004237
TCONS_00008091 mRNA upstream 98263 34091410 ~ 34097437 (-) True XLOC_004237
TCONS_00008092 mRNA upstream 123587 34116734 ~ 34147205 (-) False XLOC_004238
TCONS_00008093 mRNA upstream 125212 34118359 ~ 34124319 (-) True XLOC_004238
TCONS_00008088 other downstream 25761 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008078 other downstream 620666 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008075 other downstream 1254440 32731165 ~ 32737593 (-) True XLOC_004221
TCONS_00008067 other downstream 2819779 31170349 ~ 31172254 (-) True XLOC_004210
TCONS_00008056 other downstream 3483242 30424226 ~ 30508791 (-) True XLOC_004205
TCONS_00008102 other upstream 362397 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008105 other upstream 473248 34466395 ~ 34466513 (-) True XLOC_004247
TCONS_00008119 other upstream 1231875 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008174 other upstream 3306224 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008194 other upstream 4181924 38175071 ~ 38175150 (-) True XLOC_004294

Expression Profile

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