Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00008091 |
| length | 695 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 6 |
| gene id | XLOC_004237 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 34084532 ~ 34097437 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0051289 | protein homotetramerization | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0019441 | tryptophan catabolic process to kynurenine | biological_process |
| GO:0019442 | tryptophan catabolic process to acetyl-CoA | biological_process |
| GO:0006569 | tryptophan catabolic process | biological_process |
| GO:0005575 | cellular_component | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0004833 | tryptophan 2,3-dioxygenase activity | molecular_function |
| GO:0016491 | oxidoreductase activity | molecular_function |
| GO:0051213 | dioxygenase activity | molecular_function |
| GO:0020037 | heme binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-6014 | Predicted to enable heme binding activity and tryptophan 2,3-dioxygenase activity. Predicted to be involved in protein homotetramerization; tryptophan catabolic process to acetyl-CoA; and tryptophan catabolic process to kynurenine. Predicted to act upstream of or within tryptophan catabolic process. Is expressed in gut and liver. Human ortholog(s) of this gene implicated in Gilles de la Tourette syndrome and familial hypertryptophanemia. Orthologous to human TDO2 (tryptophan 2,3-dioxygenase). |
| ensembl_id | ENSDART00000138579 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00008482 | lncRNA | downstream | 98263 | 33992033 ~ 33993147 (-) | True | XLOC_004235 |
| TCONS_00008832 | lncRNA | downstream | 402461 | 33676834 ~ 33688949 (-) | True | XLOC_004229 |
| TCONS_00008831 | lncRNA | downstream | 405499 | 33676834 ~ 33685911 (-) | False | XLOC_004229 |
| TCONS_00008481 | lncRNA | downstream | 689934 | 33344982 ~ 33401476 (-) | False | XLOC_004227 |
| TCONS_00008480 | lncRNA | downstream | 746953 | 33339539 ~ 33344457 (-) | False | XLOC_004227 |
| TCONS_00008099 | lncRNA | upstream | 122913 | 34220350 ~ 34225557 (-) | False | XLOC_004242 |
| TCONS_00008100 | lncRNA | upstream | 125456 | 34222893 ~ 34225798 (-) | True | XLOC_004242 |
| TCONS_00008101 | lncRNA | upstream | 152019 | 34249456 ~ 34255220 (-) | True | XLOC_004243 |
| TCONS_00008833 | lncRNA | upstream | 218088 | 34315525 ~ 34358689 (-) | True | XLOC_004244 |
| TCONS_00008834 | lncRNA | upstream | 453410 | 34550847 ~ 34577001 (-) | False | XLOC_004249 |
| TCONS_00008089 | mRNA | downstream | 25692 | 33996526 ~ 34065718 (-) | True | XLOC_004236 |
| TCONS_00008087 | mRNA | downstream | 131092 | 33921358 ~ 33960318 (-) | True | XLOC_004233 |
| TCONS_00008085 | mRNA | downstream | 172101 | 33870357 ~ 33919309 (-) | False | XLOC_004232 |
| TCONS_00008086 | mRNA | downstream | 172396 | 33873621 ~ 33919014 (-) | True | XLOC_004232 |
| TCONS_00008084 | mRNA | downstream | 222502 | 33864502 ~ 33868908 (-) | True | XLOC_004231 |
| TCONS_00008092 | mRNA | upstream | 19297 | 34116734 ~ 34147205 (-) | False | XLOC_004238 |
| TCONS_00008093 | mRNA | upstream | 20922 | 34118359 ~ 34124319 (-) | True | XLOC_004238 |
| TCONS_00008094 | mRNA | upstream | 53740 | 34151177 ~ 34151487 (-) | True | XLOC_004239 |
| TCONS_00008095 | mRNA | upstream | 57156 | 34154593 ~ 34188346 (-) | False | XLOC_004240 |
| TCONS_00008096 | mRNA | upstream | 60741 | 34158178 ~ 34166960 (-) | True | XLOC_004240 |
| TCONS_00008088 | other | downstream | 125138 | 33966158 ~ 33966272 (-) | True | XLOC_004234 |
| TCONS_00008078 | other | downstream | 720043 | 33371251 ~ 33371367 (-) | True | XLOC_004227 |
| TCONS_00008075 | other | downstream | 1353817 | 32731165 ~ 32737593 (-) | True | XLOC_004221 |
| TCONS_00008067 | other | downstream | 2919156 | 31170349 ~ 31172254 (-) | True | XLOC_004210 |
| TCONS_00008056 | other | downstream | 3582619 | 30424226 ~ 30508791 (-) | True | XLOC_004205 |
| TCONS_00008102 | other | upstream | 258107 | 34355544 ~ 34355662 (-) | True | XLOC_004245 |
| TCONS_00008105 | other | upstream | 368958 | 34466395 ~ 34466513 (-) | True | XLOC_004247 |
| TCONS_00008119 | other | upstream | 1127585 | 35225022 ~ 35225139 (-) | True | XLOC_004254 |
| TCONS_00008174 | other | upstream | 3201934 | 37299371 ~ 37299485 (-) | True | XLOC_004279 |
| TCONS_00008194 | other | upstream | 4077634 | 38175071 ~ 38175150 (-) | True | XLOC_004294 |
