RNA id: XM_026928986.2


Basic Information

Item Value
RNA id XM_026928986.2
length 2079
RNA type mRNA
GC content 0.51
exon number 4
gene id zgc:77849
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 869759 ~ 948803 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCTCGCCTGCGCGTCGCCGTTTTGTTTTGTCAACCGGTGGACTTCATGCGCCATGCAGCCGCGGGTTTGACGTGGGGGATAAAAAACCCTAACAGCTGTGGATAAGGCCGCGGCGGGATCCAGGAATTCATTTCGgaataagtataaaaatattatctGACACATAAAACAATAGTCGGTGATATCAGTAGTtatggaggagaagaaggaggagggagAAGCGGAGATCCAGGAGCACGGACCCGAGCACTGGTTCTCCAAATGGGAGCGGCAGTGCCTGGCTGAGGCCGAGCAGGACGAGCCGAGCGAGGAGGAGCCGGAGCAGAGCCGGCAGAAGCTGTGGCATCTCTTCCAAAACTCCGCCACGGCGGTCGCGCAGCTCTACAAAGATCGAGTGTGTCAGCAACAGGGGCTTTCTCTGTGGGTCCCATTTCAAAATGCTGCTACAGCCGTCACCAACCTTTATAGAGAGAGCGTGGAAGCGCACCAGCGCAGCTACGAGCTAGGCATTCAGATTGGCCACCAGAGACGCAACAAGGACGTGCTCGCCTGGGTGAAGAAGAGGAGGCGGACCATCCGGCGCGAGGACCTCATCAGCTTCCTGTGCGGCAAAGCCCCACCCCCACGCAGCTCACGGGCTCCGCCCAGAATCGCCATGGCGCCGTCATCAGAGACGAGCTCTTCCGTCGAGACAGACCTGCAGCCGTTTAGGGAGGCCATCGCTCTGCACGgccTGAGCGGTGCCATGGCGAGTATAAGCATGCGCTCCGGAGCACCGGGATCGCCCACACACCTGAGCGCAGGCTCCACCCCCGGCCGCCGCAGGAACGGTCTCCACGACGTCGACTTGAACACCTTCATCGCCGAGGAGATGGCGCTCCACCTGGACAACGGCACCCGCAAGCGGAGCTCCGCCCAGTCGCGGTGATGTCATCACAGACTCGCCCACCCACAAACGCAATAGGATGATCTGAGCTGTCTCGAGTTGACACGGAGGGGAGTGGGgggaaacaaaaaaggaaaagaaaagattaagagaaattaaacaaactaaaaagcCACTTGTCAGTCATCCTCCCATCTTTACTCCGAACGGGAAAACCTCGCGGCGGTCCGGCGCGTTCCTCCGAACCGATCGAAAGAACCGAGCGGGAGGCGGAGGCTCAGCGCAAAGTGCCCTTCCATGCGATTACGCCtgcatacactcacacaccttcAGTTCACCTTTTTCTGTTCGCGTCGAATGTCCGAGCGAGTACGATGAAACTCGTACCGAGTGCGggagaaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagatataaGTGGTGTGAGTGATGTTATGAATGTAAaggtgtgtttttggtttgcatagtgagtgtgtgtgagtgtgtgttagtgcgaacatgtgagtgtgtgtgagtgtgtgtgtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgataccTGCCTCCTCCAAACAGCGCCTGTCACTGCCCCAGCTCAGCTACCACACTGCGGCTTAAAGAcaaacaagtgttttttttttattttattgttattattattattttaattttaaatattatttacaatgttatttgtatttttattttatttctcgccttctgttttcttttgttttttgtttttttttgctgctcaAGAAGCAGGCACAAGTGCTCCAAAAGCAGTACTTACTCTGTGTGAGCATGACCCTGAatcacttcattttatttttcttctactGTGAAGTTCTCATCCTTCTCATGAGTTCATTCTGTAATCttccactcctcctcctcctcctcctcctctcactctcgtcctcttcctcctcttcttcctcttcctcttcctcctcttcctcagcaCATCTCCGGTGTAACtttatgaaatgtaaataacagtAGGTGCTGACATAGACTTGTGGTACATATTGTAAAAAAGAGCTGTGCAGAGACCATTGAATTGTTAATGTACAATAATGATTCTTGCATTAAAGAAATGAAGCTTTTAACTAAA

Function

GO:

id name namespace
GO:0071466 cellular response to xenobiotic stimulus biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU437066 lncRNA downstream 167780 701616 ~ 701979 (-) False prkcba
TU437096 lncRNA downstream 168471 701084 ~ 701288 (-) True G368944
TU437060 lncRNA downstream 196729 671640 ~ 673030 (-) True G368912
TU437062 lncRNA downstream 196729 671640 ~ 673030 (-) False G368912
TU437049 lncRNA downstream 277680 591252 ~ 592079 (-) False rasd3
TU437443 lncRNA upstream 387436 1266706 ~ 1270364 (-) True LOC117596193
XR_004577363.1 lncRNA upstream 387811 1267081 ~ 1270425 (-) False LOC117596193
TU437449 lncRNA upstream 397803 1277073 ~ 1277650 (-) True G369243
TU437513 lncRNA upstream 486093 1365363 ~ 1375213 (-) True G369298
TU437512 lncRNA upstream 490864 1370134 ~ 1396598 (-) True G369297
XM_026929176.2 mRNA downstream 158444 703199 ~ 711315 (-) True tlr2
XM_034300162.1 mRNA downstream 161519 703199 ~ 708240 (-) False tlr2
XM_034300404.1 mRNA downstream 167414 653453 ~ 702345 (-) True prkcba
XM_034300403.1 mRNA downstream 218331 645476 ~ 651428 (-) True LOC113535779
XM_026929185.2 mRNA downstream 277164 591136 ~ 592595 (-) True rasd3
XM_026928831.2 mRNA upstream 17954 897224 ~ 902489 (-) True fscn1b
XM_026929344.2 mRNA upstream 84585 963855 ~ 969617 (-) True smcr8b
XM_034299980.1 mRNA upstream 91522 970792 ~ 979232 (-) True mief2
XM_034299979.1 mRNA upstream 91522 970792 ~ 979215 (-) False mief2
XM_034299981.1 mRNA upstream 91522 970792 ~ 974624 (-) False mief2
XR_004577324.1 other downstream 642657 202654 ~ 227102 (-) True si:dkeyp-75b4.8
TU437316 other upstream 32283 911553 ~ 915683 (-) True G369125
TU437448 other upstream 396751 1276021 ~ 1276813 (-) True G369242
XR_004577318.1 other upstream 662092 1541362 ~ 1599744 (-) False nrp2a
TU437816 other upstream 912917 1792187 ~ 1795224 (-) True G369586
XR_003403632.2 other upstream 1687487 2566757 ~ 2574471 (-) False LOC113535702

Expression Profile