RNA id: XR_004577318.1


Basic Information

Item Value
RNA id XR_004577318.1
length 7086
RNA type misc_RNA
GC content 0.47
exon number 17
gene id nrp2a
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 1538453 ~ 1611666 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacacacacacagagagagagagagagagagagagagagagagagctgggtCTGAAGACAGAGCGCGCGCGGGGTTTATGCTCAGAGCAGCGGCGGCGGCGGTGGCGGTGGGTGTCGTTGCTGTTGCGCGCGCGGACTCGGTGGAAGTGGACGAGCTCGTGCCTGCGCGCGCTTTAACGgctctacactctacactactggagtttcttttttttaaatgtgtgggttttttttcctctggggACCATAAAACGGAGACAGCGCGAGCGAGAAACCGCCAGGAACTTAATCCTcctttagaaataataataataataataataataataataataataataataataaaagaaaaagcgGAAGAGGTTTTCCATCTgaacttttttctcttctgatgtgaactttttgtgtttttttgagtttttgtgtgttttttttttttaaaccaagatCTCTCCAGATCTCAGGACTGAAGCGCGTTTGGCACGATggatatcacacacactctcacacacacactcctgctgctGGTGTGCTGCTGCAGCTCCACAGCGCGAGCAGAGGCAGAAGGTGAGAAGTGTGGTGGGCACGTTGATGCCACCGATGCGGGTTATATCACTTCGCCCGGATACCCTTTGGAGTACCCGCCGCACCAGAACTGCGAGTGGGTAATCACAGCCCCGGAACCCACCCAGCGCATCGTGCTGAACTTCAACCCCCATTTTGAGCTGGAGAGGCTCGACTGCAGGTATGACTTTATTGAGATTCGAGATGGGAACTCAGACTCGGCTGAACTTCTGGGGAGGCACTGTAGCAACATTGCTCCCTCAGCCATCATCTCCACCGGCCCCGTCGTTCACATCAAGTTTGTCTCCGATTACGCTCACCAGGGTGCCGGGTTCTCACTGCGTTATGAGATCCACAAGACTGGTTCAGAACACTGTTTCCGGAATTTCACTGCACCGTCCGGCGTGATCGAGTCACCCGACTTCCCCGACAAGTACCCTCACAACCTGGAATGCTCCTACATCATCATCGCCCCTCCACAGACAGAGGTTACCCTCACCTTCAAGACCTTTGACCTGGAGAATGACCCCTTGCTGATGACTGAGGCTGAGTGCAAATACGACTGGCTGGAAGTGTGGGATGGACTGCCCCAGGTTTCACCACTGATTGGCCGATATTGCGGCATGAAGATCCCGCCAGAGATCGTGTCCTCCACAggtctcctgtctctctcctttcaCACAGACATGGCAGTGGCCAAAGATGGCTTCTCTGCACGCTACAACATGACTCGCAAAGACGTTACTGACAGCTTCCACTGCAACACTGTGTTTGGCATGGAGTCAGGAAAGATCTCAGATGAGCAGATTTCTGCTTCGTCCTCGTTCTATGATGGCCGCTGGCTTCCTCGCATGGCCCGTCTCAACAACGAGGACAATGCCTGGACACCTGCAGAGGACAGCAACAAGGAGTACATTCAGGTGGACCTGCACTTCCTGAAGGTTCTAACGGGGATCGCCACACAGGGCGCCATCTCGAAGGAGACGCAGAAGTCGTACTACGTCACCACCTTCAAGCTGGAGGTCAGCACAAACGGAGAGGACTGGATGATGTATCGCCATGGCAAGAACCACAAGATATTCCATGCTAACACAGATCCATCGGAAGTGGTGCTGAACCGCATTCCTCAGCCCACCCTGGCCCGGTTCGTCCGCATCAGACCCCAGACGTGGAAGAATGGCATCGCTCTGCGCTTCGAGCTCTATGGCTGCCAGATCACAGACGCTCCGTGCTCCGAGCTCCAGGGCCTGCTCTCCGGCCAGCTTCCGGACTCGCAGATCTCAGCGTCCTCGTTTCGAGATCTCCACTGGGCCCCGAGCACGGCGCGCCTGGTGGCTAGCAGGTCCGGCTGGTTCCCCGCCTCGCCGCAGCCGCTCGCCGGAGAGGAGTGGCTCCAAGTGGACCTGGGGACGGCCAAGACGGTGAGCGGTCTCATCACTCAGGGAGCGAGAGGCGGAGACGGAGGGACGAGCTCGGAAAACCGCGCCTTCGTACGGAAGTACCGCCTGGCCCACAGCGCGAACGGAAAAGACTGGAACTTTGTGATGGACAGCAAGACCAGCATGCCTAAGatttttgaaGGCAACGTGCATTTCGACATGCCGGAGCTGCGGCGATTCGAGGAGATCGTGACTCGGTTTGTCAGGATTTACCCTGAACGCTGGTCTCCCGGCGGCATCGGCATGAGGATAGAGGTTCTGGGATGCAGCCTTCCAGaaaCTTCCACGGTTACCGTGCCAACTTCCACGGTCATGCGTTCTTCCCCTGCGGAAAGCAGCACGGCTCATAAACTCAGCTTCCCAACCTCAAGCATATCTCCCCCCTCTTCCATGGTCCTGTGCGATTTTGAGCAAGGTTTGTGCGGATGGACTCATGACCCCAACTCTGACATCATCTGGGCTTTGCACACCTCCAGCAGAATCACCGCCCAAGGCCAAAGTCAGGACCTCTCTTTAGGCTCCAACAGTCTGGGAAACTACCTATACATCGAAGCGAGTCCCAAGACACAGGGAAAGAAAGCCAGGCTCTTCAGCCCAGAGGTGGGTCCTGACACAGGGCCTCTGTGCTTGAAGTTCTCCTATCAGCTAGAGAATGAAGGAACCCTGCGGGTCCTACTGCGCAACCCGCTTCGAGAGGAAACCCTTCTCTGGGCTCTCCATGGCAGCCAGGGTTCCATGTGGAAGGAGGGACGCACTATCGTACCTCGATCCCCTAAGGAATTCCAGGTGGTCATTGAAGGCATCTTTGAAAAGGCAACCACAGGCCACATCTGGATTGATAACATCCATATGAGCTCCAGCACGCCACTGGAGGAATGTACACaaCCTATTGATGCCTTTCCCCCAGATATGACTGGGGGAGCCCTACCAGGCAGGAGTGAGCCAACAGTAGATACCCTGTCAGTGCCACCTATTTCCCCCAACTGGTATTACTTCATGGCTGGTGGAGGCGCCATCTTGTTCCTGGTCATTGCCGTTGTCATGGCCATTGGCTGTCGCCGCCTAACAGCCAAGAGGAGCCGACCCACCATGGCCTACTATAGTCCCCACAGTGCTTACTACCCAAATGGTGCCATGCCCAGAGCAGGGGGGGGTCCTAAGTTGACTGTTTGGGTCGAGAAGGGGGATGGAAACTCCTACTGGTGAGGGGACCCGGTGTGATAAATGTTGACCTACATTGCTGACAGAAGGTCAGAGGAAAAGAACTCAGAAGAGCACTGAAAAGTTGGTCTAGTGTAAGGGATGCCTCAAACAAGAACCTTTTTTTCACCTCGCTACCAACTGCTTGGGAACTGCGCAACTGAAGATTGGACAGGAACCAGCATCTGCTCTAAACCTGTtggttttctttgtgtttttttttttttcgatgcACCTTCACTTGCTGGATGTGGTGAGACACTGAGAGTCTGTTTACTGCAGAATACCAGCCAGTGGTTGTCTGGAAGAGCACCATATTGGAAAACCTTCCAGTACGGGCTTAACTGTGATGTGACCAGGTTGAAAGCTGCTTGTGCCTGTGCCTGGTGGTAGCTCCTGAACTACCAAACCGTCAGAGACTAAGTGGACATGGTGTCCAAGCCAGTGACCTTAATCATAGATCCAAGACTGGCATGATGCCTTACTAATATTTCAGATGGGGATTGGTTCCAGCTGCTCCCAAATCAGGGCTAGATGATGGAATGGATTACGAGATCAGGACTGAAGGACAGTCTTTATGTTTTTGCAGCTCTAGAtgacgataataataataataatgtatatctAAATGTGGTGTCAACTTGTGTGGTTTACAAAATGGAATGAATCTTGGGTAAATTTacagctgtcaaaatgtttgCACTTTGAATAGATCCTGGTAGTATTTGtgaggtggtctgggaaaaaCCATCGGATGACGCTGTGGCTAAATTCGGgcaaataggaaaaaaaaggatgaaaaattTGGGTTTTGGCTAAAAATCATGGGTAAGGAGTCGGGTGGTAAAAGAcggtggtaaaaacagtcaacATTGTGAAAAGGTATCCAAAACCTCTCTAGCAAAGTGCAATTTCCTCACACAGTTAACATCAAACTTTGCATAGCTATGTGCCATAGTGAACTGTAGCTGAATTGATTCAATTTCAGATACCGGCTGTCAAATTTCCCACGATGCTCCTACGCCACAGTTGAAAGAGAACacttaaatgtaattttctccatttttagACTTTAAAGTGCtagaagcaagagagagagagagatttcagcTAATATATGTAGTTTTTGACCACAATATAATAGAACAGAAAGAAGGGgtttcccaggccgccacacaATTTACGATGTCTCTGTTTACTATTTAGCCAAAAAAAGACAGTCAGTGGACCATTTCTAATGAGTGTGTTGAGGCTGGGCAATGGGGTATAATACAATTGAGCATGCATGTGTacaattttgtatatttttacagGCTCAGGTTCAGTGATTAGCTTGATTTTAAAGAGAGACAGTCCAGGAAGAACCCTCCAGAACAACAAATcacatttcacatattttagGTCACATTAAAGCTAGCATCAAAAAGGTTCATATTCAGAGAGTAAAattggaagagagagagagaacattttCATTGCCATATTTCTCCATCCGAAGACAGGGCTACTAGctttctgcatttctgcatGCCTGTTCCTCATATTTCACAGCAGAAATCCTCCCAAATATTGCGTAGGCCCATCGGTTCCAAGCCAGAAGTGAGGAGGCGTGCATTATTCCAACCAAACGGCTGTCACTGTTTTATTCCCTGCAACAAGCCACATAAACAACACCAGCTGCTTCCCTTCACAGCCTTGTCTTAATGaggaccgagagagagagagagagagagagagagagagaggtgaaggaGCGAGCTCCATGCACTCCCAACAGCTGGTAGACATTTTGTTATGCCACAGGCCTTGGAGACTTCCAGAACAATGAAGAGCATGCAGCACCTCCACGTGGTTCACTAGTTTTCGGAATGAATTTcagaaatccttttttttttttttggttagtgAGCACTGGTGTTGAAAATTAGATGAAGAGATCAAGGGAGACTTCCATTAATGCTTGTTCTACTTGTTCCCTAGTACCCAGTGTATTTCCTAGTTTCCTTGCTTGATAGTTCTGAGTGTTTCCTGGTTTGAAGTGTGTTTCCTAGTTTCCTCATTTGCtagttttgattatttttgagtGTGTTTCCAAGTTTCACTAGTTCTGAGTGTTTCCTAGCTCCTTTGTTCTATAGTTTCAAGTGTTTCCTAGTTTCCTTGTTCCCTAGATTTGAGTGTATTTCCTAGTTTCCTTGTTCCCTACTTTCAAGTGTCTTCCCTAGCTCTCTTGCTCCAGAGTTCCAAATGTTTGCTAGTTACCTTGTTGTTCACTATTTTAAAGTGCATTTCCTAGTTTCCTTGTTCAAGTTGTACCGTGTTCTCTAGTTCCCAATGTGTTTCTTAGTTTCCTAGTTCTGTGGTTTGAATGTGTTCCCTAGCTTCCTTGTTGTAGTTTCGAGCATGTTTCCTAGCTCCTTTCTTCCTCACTTTGGAGTGCATTtcctagtttatttatttcctcaTTCACTAGTTAAGAGTGTTTCCTTGTTCCCAGTGTCTTTCCTAGTTCTGAGTGATTCTCCTACTTTCCTAGTTTCCCAAATGCCTTTCATAGTTTCCTTTTTGCCTAGTTTTGAGTATCTTTTCCTAGTTTTGAGTGGTTTTTCCTAGTTTCTGCAAGTTGCAGTATATTTCCTAGTTCCCAGTGTCCCCTGACTCTGTGTTCTCTAGTTCCTGCTGTTCTAGTTTCCTATGCACTGTTTGGGGTGCTTTGGATGAAATTTAGCACACCGATTCGCCATAGTTATGCACAACGGTTGATTATCCTTCACTTCATTTCTCTCATGCTGCTACTCAAAGTCCGGTATTCAATATGGCTTACACGGTTACGCTCACTGTTGTAACAGGAAGTAGAAAGCGATGATCCAGTCTCAATAATAATGGTGGTATGGTTATGAATGACACAAATATGTAGCTAATCCAGAGGTAGGACTTTAGTTGTGTATGGTTTTACCTTGTATTTCTAGATTATAGAGCGTATTAATTAGCGTTGTTTGGAGGAGGGTTGGCGGCAGTAAAGAGAAAACTTTTGTCAGCTATTCATTGCTATTTCCATCACATAGATAAGTGGTAAGAGAAGTATTGGCATTGGCTTGCAATGTGCTTTTAAATTAATCTCGCCATACATTCTTTCAAGcgcttaatatttttaattagttaatgGAACCGATAGCATTCATTACAGCTGCTGGAAGTTTTCCTCCTTCGTGTCCCTGGAGAACACGGTAATGAGTGAACACTTTCTCCAGAGACTTATCGTCCAGAGAGACTGGATGCCAAAATCTTTTAAACCCCCCACCCCCAGatgtctgcatttttttttgcaccccttctaaaaataaaactatttgtGACTAAATTATACTCTTCTTTGGAGATGGGCATCTCAGGGCTTGTAGAACAGGCGGACAGTCGTTGTCTTCTCAGAGTTGTTGTTATCTCGTCCGTGTAGAACAGATTGCTCACAACAGAGCCAGTCAGCTCGCCACCTTCACATCCACAGCACGCAGGCTTTCACATCAATTTCTCAGCCTTGTTTGGTTTGGACCCAGCAGGCCTCAGTTCAAACGCTTTCTCAACAAAGGCGGTATTGTCCCGATAAAGCACCTAACGATGCTTGCCGTTCTGGCCGTTTTTATCACCCCACACAGTTTATGTAGGTGGTTCTGATAAGACTGTACTTATGTTTaaaaggatgatgatgatgatgaaggcaATGCACTTTCCTGTATGAATGTGGCGCTATACCTCAATCTTAAAATGAGTGTgctgtttggaaaaaaaaaaaaaaaaaaaatgaacggAATATTTTTTGCTTGATGAATTGGAAATGCCCTTTTAAAAGTATGGTAATAAAATCTTATTTTTCTAA

Function

GO:

id name namespace
GO:0030947 regulation of vascular endothelial growth factor receptor signaling pathway biological_process
GO:0001755 neural crest cell migration biological_process
GO:0038084 vascular endothelial growth factor signaling pathway biological_process
GO:0001525 angiogenesis biological_process
GO:0001570 vasculogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component
GO:0017154 semaphorin receptor activity molecular_function
GO:0005021 vascular endothelial growth factor-activated receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU437520 lncRNA downstream 144457 1396604 ~ 1396905 (-) True G369305
TU437512 lncRNA downstream 144764 1370134 ~ 1396598 (-) True G369297
TU437517 lncRNA downstream 155700 1384921 ~ 1385662 (-) True G369302
TU437513 lncRNA downstream 166149 1365363 ~ 1375213 (-) True G369298
TU437449 lncRNA downstream 263712 1277073 ~ 1277650 (-) True G369243
TU437818 lncRNA upstream 176575 1776319 ~ 1795224 (-) False G369586
TU437802 lncRNA upstream 185809 1785553 ~ 1823504 (-) True G369573
TU437828 lncRNA upstream 203365 1803109 ~ 1805302 (-) True G369596
TU437804 lncRNA upstream 224460 1824204 ~ 1827064 (-) True mdh1b
TU437849 lncRNA upstream 253605 1853349 ~ 1853782 (-) True G369617
XM_034300032.1 mRNA downstream 22991 1512321 ~ 1518371 (-) False en1b
XM_034300031.1 mRNA downstream 22991 1512321 ~ 1518371 (-) True en1b
XM_026928712.2 mRNA downstream 175456 1355723 ~ 1365906 (-) True LOC113535431
XM_034300143.1 mRNA downstream 295321 1204764 ~ 1246041 (-) True slc5a10
XM_034300142.1 mRNA downstream 350814 1167628 ~ 1190548 (-) True LOC113535776
XM_034300163.1 mRNA upstream 19076 1618820 ~ 1738935 (-) True pard3ba
XM_034300044.1 mRNA upstream 226401 1826145 ~ 1832729 (-) False mdh1b
XM_034300043.1 mRNA upstream 226498 1826242 ~ 1832729 (-) False mdh1b
XM_034300370.1 mRNA upstream 295304 1895048 ~ 1909374 (-) False LOC113535707
XM_034300371.1 mRNA upstream 295304 1895048 ~ 1908127 (-) False LOC113535707
TU437448 other downstream 264549 1276021 ~ 1276813 (-) True G369242
TU437316 other downstream 625679 911553 ~ 915683 (-) True G369125
XR_004577324.1 other downstream 1314260 202654 ~ 227102 (-) True si:dkeyp-75b4.8
TU437816 other upstream 192443 1792187 ~ 1795224 (-) True G369586
XR_003403632.2 other upstream 967013 2566757 ~ 2574471 (-) False LOC113535702
TU438365 other upstream 1243468 2843212 ~ 2853211 (-) True LOC117596167
XR_003403643.2 other upstream 2857691 4457435 ~ 4457541 (-) True LOC113535829
XR_004577365.1 other upstream 2859573 4459317 ~ 4459423 (-) True LOC117596196

Expression Profile