RNA id: XM_034300043.1


Basic Information

Item Value
RNA id XM_034300043.1
length 1553
RNA type mRNA
GC content 0.52
exon number 8
gene id mdh1b
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 1824204 ~ 1832729 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTAGGAACCATGGCTAAGTTTGTTCTAGCAGGAAAGGCAGATTGTCCTTATTATGCCAAAGCTGAGCTTCTAGCAGATTTACTGCAAAGCATCCTTCCTGATTTCCACATTCACAAGCTCTGCATGCTGCCTGATGCCTGGGAGAGCTGGCTTCAGGACACATGCTCACGCAACGGCTGGAAGCACGAGAGCAGCCCCATGGTGTGGAGGGAGCTGACCGACCGTGGAGGAAAGGGCGTGCTTCTCGGGGGGTTCAGTGATTTTCTTGAATATGTGCAGGGCTACTATGGTATCACGTCAGACATGGGCACAGAGCTGATGCTGAACATCGCAGCAGAAAATCTTCAGGCAGCGCAACTACACCTTCAGGATGAAGAGCGACGAAGCAAACTCCACCAATCCTTCCACATCTGGATCAGCAGTGCTCTAAACCCTATCTGCTACCACCTCGTCCCGTTACTCTTCACGTCCGGCGTATTCGCCGCCGTCCCCACCGTCAGCCTCCACCTTCTGGACGTAGACGCCAGTGAAGACTCTCTATCGGCTCTTAAAATGGACGTGGAGGACATGGCTCTGCCGCGGCTCCGCAGAGTCACCGCCCACTCCGACCCGCGTCAGGCATTCCAGTCAGCCGATCTGATCATTTTCCTGGACGATCAGGGAGCGAATGAGGACGCGGAGCAGCGGCTGAGCCAAGTGGTGCAAAGATTCACTCACTACGGATGTCTGATCGAGGACGACGCGCATAAAGAGCTGCGAGTGCTGGTGGCAGGAGACGTCTACGTCAACCTGAAGTGCGGTCTCCTGATCGAGAACGCGCCCTCCGTGGATCCACGTCGCTTTGTGGCGATCGCAGCACAGCTGGAAGGAGAAGCGAGGACTCAGCTTGCAATCCAGCTGTCTGTGAAAAGCCAAGATATCACTGATGTCATCGTTTGGGGAAACATCAGTGGTCATTTCCACATCGACCTACAGCGAGCTAAGGTTTACAGCTATAAAGGTGCCATCTGGGGACCTGCAGGATTCTCTCAGAGCGTCTTGGAGATGGTTTATgatagGAAATGGCTGAAGAACGACTTTCCAAGCTTGGTTGGCTCGCGTCGAAGCGCCATTTCTCAAATGACTAACAGACCTGCAGCTATTTCAGCAACCAGAGGAATCGTTACAGCTCTGAACGCGTGGATCAACGATTCCTCTCCTCAGGAGATCTTCTCAGTGGGTGTAGTCAGTACGGGGCACTTCGGTGTTCCTGCCGGTCTCGTGTTTTGCGTTCCCGTGACCTTCCAGGAGGGCGAGTGGTCGGTGTGTTCAGACGTCATCATCCCCGAAGAGCTGCGGAGGAAACTGGAGGCTGCCGTTAATGAGATCACAGAGGTGAAGAAgcgaaaaaacaaacaaacaaaaaaacaacacaaagttcactggttatattaataattcatatgTTTAGCACTTCATCGTGTGTattctgtgtacattttattgcTTGCAGGAAAAGACCATGGCAGATGGAATAAGGATGAAAAGTTCTGTTGCCTGAAATcatatttcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU437802 lncRNA downstream 2738 1785553 ~ 1823504 (-) True G369573
TU437828 lncRNA downstream 20940 1803109 ~ 1805302 (-) True G369596
TU437818 lncRNA downstream 31018 1776319 ~ 1795224 (-) False G369586
TU437747 lncRNA downstream 214576 1541490 ~ 1611666 (-) False nrp2a
TU437748 lncRNA downstream 237592 1538077 ~ 1588650 (-) True G369523
TU437849 lncRNA upstream 20620 1853349 ~ 1853782 (-) True G369617
TU437853 lncRNA upstream 21711 1854440 ~ 1854653 (-) True G369618
TU437880 lncRNA upstream 55775 1888504 ~ 1889374 (-) True G369641
TU437914 lncRNA upstream 185986 2018715 ~ 2021315 (-) True G369663
TU437910 lncRNA upstream 186189 2018918 ~ 2021315 (-) False G369663
XM_034300163.1 mRNA downstream 87307 1618820 ~ 1738935 (-) True pard3ba
XM_034300165.1 mRNA downstream 226498 1541362 ~ 1599744 (-) True nrp2a
XM_034300164.1 mRNA downstream 226500 1538453 ~ 1599742 (-) False nrp2a
XM_034300032.1 mRNA downstream 307871 1512321 ~ 1518371 (-) False en1b
XM_034300370.1 mRNA upstream 62319 1895048 ~ 1909374 (-) False LOC113535707
XM_034300371.1 mRNA upstream 62319 1895048 ~ 1908127 (-) False LOC113535707
XM_034300369.1 mRNA upstream 62319 1895048 ~ 1906506 (-) True LOC113535707
XM_034300372.1 mRNA upstream 62319 1895048 ~ 1902079 (-) False LOC113535707
XM_026929215.2 mRNA upstream 82934 1915663 ~ 1937075 (-) True klf7a
TU437816 other downstream 31018 1792187 ~ 1795224 (-) True G369586
XR_004577318.1 other downstream 226498 1541362 ~ 1599744 (-) False nrp2a
TU437448 other downstream 549429 1276021 ~ 1276813 (-) True G369242
TU437316 other downstream 910559 911553 ~ 915683 (-) True G369125
XR_004577324.1 other downstream 1599140 202654 ~ 227102 (-) True si:dkeyp-75b4.8
XR_003403632.2 other upstream 734028 2566757 ~ 2574471 (-) False LOC113535702
TU438365 other upstream 1010483 2843212 ~ 2853211 (-) True LOC117596167
XR_003403643.2 other upstream 2624706 4457435 ~ 4457541 (-) True LOC113535829
XR_004577365.1 other upstream 2626588 4459317 ~ 4459423 (-) True LOC117596196
XR_004577366.1 other upstream 2628480 4461209 ~ 4461315 (-) True LOC117596197

Expression Profile