RNA id: TCONS_00008104


Basic Information

Item Value
RNA id TCONS_00008104
length 1561
RNA type mRNA
GC content 0.47
exon number 4
gene id XLOC_004246
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 34401460 ~ 34480822 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCAGtcttaaaaaagattaaaaaaaagtgtttaagtGTCTTAAAATTAGTTCATGTGACCTATTggataagatattttgaagaatgttgtaaactggtaGCCAGTGACATCCATAGTAGTGGAAAAATGAATTCAATGGTtactgttttccaacattcttcaaagtagtTTAAATTAAAGAAAGAATCTTTTCAAGTTTGACAAGTGGAGGTgcagtaaacgatgacagaattttcatttccaGATGAATTGTCCCTTGTGTGCGATTCTCAGGTaaacaattgtaattattaatttccttttttttgcatttaggCCATGATTGGACACTAGGAGCTGTCAGCAAGACTTAAGGAAGAGCCTGCTGTTGTATTTTGCGCATGTGGAAGTGTCTCCATGGGTGTCCTGCGGGTGCTGTGGGGCATCATGGGAAGGATCAGCATGTTCAGGTCGTATCAGATCGTGCTTCTCCTCGCTGCAGCTTTAGCAGTGGTGGCGTTTTATTACTTCGGCTCAGAAAAGCAGAACTTCTCCAGCACCACAAAACGCATCAAGGAGACGCAAGCGAGCCATAACAGCAACCGCGACGACGCCGATCTCTCCATAGACATCCAGCCGGGACATCTAGAGAGTAGACCGGGAGCCGGAGCGGAGCTGGAGGGAAAACCCAAACGCTTTCATGCTCTCATGATGTTCACCAAGGTGGACAAGAGCTTGAGCCTGCAGCAGAAATTTCAGACGGCCATGCGCTCAATGGTCAAACATGGACGCTTTCTGGAGGATGAGATACTGGTTCTGCATTACGTCTCTGATTTGGGCAGTCAGGAGTTTGGGGAGAAGATGCTTCCTGAACTCCTGCTGGATGCAAGCTTTCAGTATGAGGTCGTGTTTCACAATGTTGATACTCTTACGGAGAAATTGTTCCCGATTGTAGAGGCCATGCAGAAGCACTTTAGTGCTGGTTCGGGTGCATATTATAGCGATGCCATCTTTTTCCTGTCTGTGGCCATGCATCGCATCATGCCTGCAGAATTGAAGCGCATTGTGCAGTTGGATCTGGATCTAAAATTTAGAAGCAATATCAGAGACCTTTTCCAAGAGTTCAACCATTTCCCTTCGGACGCCGTCATTGGGATTGCACGTGAAATGCAGCCAGTTTACAGGCACACTTTCTGGCAGTACCGCAAAGAAAATCCCAAATCCCGTGTAGGTGACCCTCCTCCAGACGGTCTGCCAGGCTTCAACAGTGGCGTAATGCTTCTAAACCTGGACTCCATGCGTCGCTCCACTGTATACAACCAGCTCTTGGAGCCTGAGCGAGTGGCCCGACTTGCAGATAAATACCACTTCCGGGGACACCTGGGAGATCAGGACTTCTTTACCATGATCGGGATGGAGCACACCGAACTGTTTTACCCTCTTACCTGTGGCTGGAACCGGCAGCTTTGCACTTGGTGGAGGGATCATGGGTATGGGGACGTCTTCCAGCTGTATTATCATTGTGACGGACCAGTGCACATCCATCACGGCAACTGCAACACTCCCATTCCTGACGATTGA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0035252 UDP-xylosyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
ko00514 Other types of O-glycan biosynthesis
ko01003 Glycosyltransferases

ZFIN:

id description
ZDB-GENE-120521-2 Predicted to enable UDP-xylosyltransferase activity. Predicted to be located in membrane. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human XXYLT1 (xyloside xylosyltransferase 1).

Ensembl:

ensembl_id ENSDART00000189604

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008833 lncRNA downstream 43727 34315525 ~ 34358689 (-) True XLOC_004244
TCONS_00008101 lncRNA downstream 147196 34249456 ~ 34255220 (-) True XLOC_004243
TCONS_00008100 lncRNA downstream 176618 34222893 ~ 34225798 (-) True XLOC_004242
TCONS_00008099 lncRNA downstream 176859 34220350 ~ 34225557 (-) False XLOC_004242
TCONS_00008482 lncRNA downstream 409269 33992033 ~ 33993147 (-) True XLOC_004235
TCONS_00008834 lncRNA upstream 72622 34550847 ~ 34577001 (-) False XLOC_004249
TCONS_00008835 lncRNA upstream 959788 35438013 ~ 35441417 (-) True XLOC_004255
TCONS_00008836 lncRNA upstream 1100505 35578730 ~ 35741441 (-) False XLOC_004257
TCONS_00008483 lncRNA upstream 1101632 35579857 ~ 35585628 (-) False XLOC_004257
TCONS_00008484 lncRNA upstream 1186326 35664551 ~ 35741440 (-) False XLOC_004257
TCONS_00008098 mRNA downstream 169510 34219991 ~ 34232906 (-) False XLOC_004242
TCONS_00008097 mRNA downstream 183205 34201183 ~ 34219211 (-) True XLOC_004241
TCONS_00008095 mRNA downstream 214070 34154593 ~ 34188346 (-) False XLOC_004240
TCONS_00008096 mRNA downstream 235456 34158178 ~ 34166960 (-) True XLOC_004240
TCONS_00008094 mRNA downstream 250929 34151177 ~ 34151487 (-) True XLOC_004239
TCONS_00008106 mRNA upstream 10644 34488869 ~ 34522249 (-) False XLOC_004248
TCONS_00008107 mRNA upstream 11185 34489410 ~ 34518362 (-) False XLOC_004248
TCONS_00008108 mRNA upstream 11185 34489410 ~ 34521342 (-) True XLOC_004248
TCONS_00008109 mRNA upstream 76811 34555036 ~ 34577106 (-) False XLOC_004249
TCONS_00008110 mRNA upstream 79077 34557302 ~ 34572202 (-) False XLOC_004249
TCONS_00008102 other downstream 46754 34355544 ~ 34355662 (-) True XLOC_004245
TCONS_00008088 other downstream 436144 33966158 ~ 33966272 (-) True XLOC_004234
TCONS_00008078 other downstream 1031049 33371251 ~ 33371367 (-) True XLOC_004227
TCONS_00008075 other downstream 1664823 32731165 ~ 32737593 (-) True XLOC_004221
TCONS_00008067 other downstream 3230162 31170349 ~ 31172254 (-) True XLOC_004210
TCONS_00008119 other upstream 746797 35225022 ~ 35225139 (-) True XLOC_004254
TCONS_00008174 other upstream 2821146 37299371 ~ 37299485 (-) True XLOC_004279
TCONS_00008194 other upstream 3696846 38175071 ~ 38175150 (-) True XLOC_004294
TCONS_00008207 other upstream 4469762 38947987 ~ 38949751 (-) True XLOC_004305
TCONS_00008210 other upstream 4611650 39089875 ~ 39089991 (-) True XLOC_004308

Expression Profile

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