RNA id: TU437816


Basic Information

Item Value
RNA id TU437816
length 3006
RNA type TUCP
GC content 0.40
exon number 2
gene id G369586
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 1776319 ~ 1795224 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGTTTTTGTCAAAATTCTATCTAACTACAAGTACTTACTTGTAGGAGCAAGAAGCAGTTATTGTAAATTTTCAGTAACTATCAACTGACTTGCGagttgccttttaaggaaaagaggTGGAGCTAAACAGCTCTGTTGCGActagggggcggggctaatttCCAGAAATTTTTACCTGGAAAcctgaaataaagaaagtagGCAAATCTATTCCAGCTTTCTAAGGTATCTCTGAAATCATCACATATGATAATCACATAAtctgttgtttaaaaatgattataatttgaAAACAATAAGTACAGAAACTTCAGACGATACTTTTATCCAATCAAATCCTTTATTCATCTTCAAGCTGTATAACAAACAAGAAGAACCGGCATGCAGTCTCGACTAATAGTTCATaaccaaagcaaacaaaaaaagttggCTAGATTTATTTAGCTATTGTTTACGAAAATAGAATTAGCGACCTTTTTCCAGAACAGAACTTCCAAAGCTTTCCTCAGTCTAACGTAACAGCTCGCATGTTAGCGCTCTCGAAATTTAACGTTGTTTGTTGCTCTGTTCCATACGCTACAATTTACGTCTGTGTACATGTtttagtagaaaaaaaaaaaacgttaaatCGATTCTACTAAAACATCCTGATAGAAGTTCCTACGGCTGACGTGAGAACACGTCAGCTTTagcgtcctgaagtgttttattccaattTGCCATCAACTACAATTTTTAACGTATCGATGAGCGACACGTAATAGCCTACAATaaatccatttctagttacattacGCTATAATTTCGCTACTTACGTTACAACCGCTATAAAGAGTCGTTCTCTCAACAGCCTCCTTTTTCCTTTCGTCTTAAAACctcagcttgtcacgttaccgaAAAACCGAAAAGCGTaaacaccggagactccttccataaactttaaataaacgtctccttacagaaaacttcacgaTTATACGTTTCTCTTTGTTAAAATAACAccacgttattattattattattattactcttattattattagccttagattacaTATAGCGTCCGCCGTACAAgtcctgttactatagaaacgataacgtattcgaACGAGCcggcgctactgtcagagctgcggttataggaaatcaATCGCGTTCTAACCAATCgaaatcgagaattcaacagtgctgtggtacagATGTAACATCCTAATCCTAGAGGTCGTTCTTGTTTAGCATCTCAGTCAGGTTATAACTTATCGGAATACTCGCTAGGCTATTAGCAAGCTACTTCTAGGCTAGAAAAGTGCGCAACGTTTCTCCGTGACTTTATTTGACTTGCAGTGAAGTTCGGGATCCAGCCACTGAGTCACCTGATCGTCTAacaagctcaaaaaaaaaaaaaaaactctttcgATTTAATACTTGCCCCTCAGTGTTCTTGACTTGTCCAGGGCTTCAATGCAACAtagactgttaaaaaaaaaaaaaacacacactgcaggaacACACCATGAAAGCTCACACAACTCTTCTGAGCTGATGCTTCACCCAGATTGTCGTTAAACTCCAAAAACGactttacaataaaagagtatcaATTGTCAAGAATTTCCACCCACGCAGCGACACTCTTTCACAGGCAGGGGGCGATGTAAATGTTTCGATCCTCACCTCAAGAGCAATAACACCATAATACCAAACCTTTACCAAAAAGCCTTACACGCTCTTTCTTATGTCATTTCAAttttcttaaatgtttttttttagctaaaaaaaacaaacaaacaaaaacccaaaaTCACCAAAACAGGTTTGAAAACTTACATGAGGAAGAACATTTGGAGGCACAGATTCGAAGGAACGACACGCAAGATCGCTGAAGATGATGGACTCGGTTGCCAAATTCTTCTCCGTTTCAAGAgcttaattgttttgttttttttgtttttaaaaaaatctatcaaaaaaaaatctgaatcttTATCATCTGTATCAatgcaaaaatatatgtaatatttattcgttttattttatatcagtgCTTTTAATCGGGAACTAAACGtagaagccattttgttttacgcgatttaaaaatatacaaaagatTAGACGGGGGATTCTGGGAGTAATCTGGCAACTCGAGTGCTTTTTTGAATCTCTGAAATTATTGGTAGTGATTTATATAACTTaagtttgtaatttattttatgtatgttatattttttaatcgTAAAAACGTCAGCTCAAACTAGCCAAAAAATGTAAGGATTAACTTGAAATTCAAATTTCCTTTGAATTGTTCGTCAAGTTTTAAAACGTTTTCTTCACAAacgtggatttttttttttccagcttcaTTAACACACTCTTTACTCAAACTCCACCCTCCACCCTCGCGTGATCAAAGTGCTTTTATATATAGAGAAGGTGTTAAACATACAAAatcccaccaaaaaaaaaaaaaaaacaccaacattacaAACGTTGAAAGACAATCTCACGGTCTCTAAGTCGGTATGAGGAGAACCTGCGCTTTCCCATAAGGCATTGCAGCTTCGGGGCAGCAGCTGTGTCTGTGAAAAGCGGCGAGCGGACTCGGGAGGAAAGGCGACTGAGCGAGGAGATCGTGGGAGGAGAACCAGGCGAACGAGGTGGCGTTCTGAGCGCCGCACACGTGAAGCTCCGTCGGCTGGGCGTCCGAATGAACGAGAGCGGAGAGGAGCGAGCTCCACAGAGAGAGGGCGGAGTTCGGGTGGAGGGGAGGAGCAGAACTCGGGCCGTGACGGTGTCGGGGATGGTGCTGGTGGAGATCCGGAGCGTGTTCGGGTTTTTGGGTGGCGTTGGCGAGGACGCAGCAGCGAGGATGGAGCGACGAGGCCGAGGCGTGAGGATGGAAGAGGGCGGGGTTTACGGGGTCGGCGTGCGGGAGGTTGAGCTGGTGAAGAGCCGCGGACGCGGCGAGGAGACCGGTGACGCTCGTTAGGTACAGGAGACCGAGCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU437747 lncRNA downstream 180521 1541490 ~ 1611666 (-) False nrp2a
TU437748 lncRNA downstream 203537 1538077 ~ 1588650 (-) True G369523
TU437731 lncRNA downstream 217522 1492699 ~ 1574665 (-) True G369506
TU437520 lncRNA downstream 395282 1396604 ~ 1396905 (-) True G369305
TU437512 lncRNA downstream 395589 1370134 ~ 1396598 (-) True G369297
TU437828 lncRNA upstream 7885 1803109 ~ 1805302 (-) True G369596
TU437804 lncRNA upstream 28980 1824204 ~ 1827064 (-) True mdh1b
TU437849 lncRNA upstream 58125 1853349 ~ 1853782 (-) True G369617
TU437853 lncRNA upstream 59216 1854440 ~ 1854653 (-) True G369618
TU437880 lncRNA upstream 93280 1888504 ~ 1889374 (-) True G369641
XM_034300163.1 mRNA downstream 53252 1618820 ~ 1738935 (-) True pard3ba
XM_034300165.1 mRNA downstream 192443 1541362 ~ 1599744 (-) True nrp2a
XM_034300164.1 mRNA downstream 192445 1538453 ~ 1599742 (-) False nrp2a
XM_034300032.1 mRNA downstream 273816 1512321 ~ 1518371 (-) False en1b
XM_034300031.1 mRNA downstream 273816 1512321 ~ 1518371 (-) True en1b
XM_034300044.1 mRNA upstream 30921 1826145 ~ 1832729 (-) False mdh1b
XM_034300043.1 mRNA upstream 31018 1826242 ~ 1832729 (-) False mdh1b
XM_034300370.1 mRNA upstream 99824 1895048 ~ 1909374 (-) False LOC113535707
XM_034300371.1 mRNA upstream 99824 1895048 ~ 1908127 (-) False LOC113535707
XM_034300369.1 mRNA upstream 99824 1895048 ~ 1906506 (-) True LOC113535707
XR_004577318.1 other downstream 192443 1541362 ~ 1599744 (-) False nrp2a
TU437448 other downstream 515374 1276021 ~ 1276813 (-) True G369242
TU437316 other downstream 876504 911553 ~ 915683 (-) True G369125
XR_004577324.1 other downstream 1565085 202654 ~ 227102 (-) True si:dkeyp-75b4.8
XR_003403632.2 other upstream 771533 2566757 ~ 2574471 (-) False LOC113535702
TU438365 other upstream 1047988 2843212 ~ 2853211 (-) True LOC117596167
XR_003403643.2 other upstream 2662211 4457435 ~ 4457541 (-) True LOC113535829
XR_004577365.1 other upstream 2664093 4459317 ~ 4459423 (-) True LOC117596196
XR_004577366.1 other upstream 2665985 4461209 ~ 4461315 (-) True LOC117596197

Expression Profile