RNA id: TU437910


Basic Information

Item Value
RNA id TU437910
length 390
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G369663
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2018715 ~ 2021315 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCAATCAGACGGTACCTTTGATAAGAAGCCGGTCTCGTATGGACACTCTGTGTGGGGCTTCGTTGGAGCCTGACGCCGCTCCGGTCGCTCTCACACCCTCCTCCTTCTTCAGCTTACTCGCCAGCGTCAGCATCGCtgaccctcacacacacacacacacacCTTAGCTACTGTAGCTACCTGCTGCTAGTGTCGGAAACACAGAGGGGAAAGTGTCCGTGTTACACCATCATTCAGTCCGCAAAAAATAAACCGACGCTTTTACAAAGTCACCATGATAACAACAATGATGCTTTTTAAATCCccttattttacaaataaatgcgGAAAAAAACGAAGCTTGAACTTCGCAAAACACCTCCGGCAGATGTTAATAGCGGAAGCGGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU437880 lncRNA downstream 129544 1888504 ~ 1889374 (-) True G369641
TU437853 lncRNA downstream 164265 1854440 ~ 1854653 (-) True G369618
TU437849 lncRNA downstream 165136 1853349 ~ 1853782 (-) True G369617
TU437804 lncRNA downstream 191854 1824204 ~ 1827064 (-) True mdh1b
TU437828 lncRNA downstream 213616 1803109 ~ 1805302 (-) True G369596
XR_004577364.1 lncRNA upstream 94263 2115578 ~ 2144451 (-) True LOC117596194
XR_004577298.1 lncRNA upstream 165331 2186646 ~ 2187942 (-) False LOC117596130
XR_004577297.1 lncRNA upstream 165331 2186646 ~ 2187942 (-) True LOC117596130
XR_004577295.1 lncRNA upstream 177710 2199025 ~ 2245158 (-) True LOC117596129
XR_004577296.1 lncRNA upstream 222811 2244126 ~ 2245158 (-) False LOC117596129
XM_026929215.2 mRNA downstream 81843 1915663 ~ 1937075 (-) True klf7a
XM_034300370.1 mRNA downstream 109544 1895048 ~ 1909374 (-) False LOC113535707
XM_034300285.1 mRNA upstream 235106 2256421 ~ 2259148 (-) True LOC117596168
XM_034300269.1 mRNA upstream 239974 2261289 ~ 2271653 (-) False LOC113535651
XM_034300270.1 mRNA upstream 239974 2261289 ~ 2271643 (-) False LOC113535651
XM_034300271.1 mRNA upstream 239974 2261289 ~ 2266153 (-) True LOC113535651
XM_026929032.2 mRNA upstream 261476 2282791 ~ 2331670 (-) True LOC113535598
TU437816 other downstream 223694 1792187 ~ 1795224 (-) True G369586
XR_004577318.1 other downstream 419174 1541362 ~ 1599744 (-) False nrp2a
TU437448 other downstream 742105 1276021 ~ 1276813 (-) True G369242
TU437316 other downstream 1103235 911553 ~ 915683 (-) True G369125
XR_004577324.1 other downstream 1791816 202654 ~ 227102 (-) True si:dkeyp-75b4.8
XR_003403632.2 other upstream 545442 2566757 ~ 2574471 (-) False LOC113535702
TU438365 other upstream 821897 2843212 ~ 2853211 (-) True LOC117596167
XR_003403643.2 other upstream 2436120 4457435 ~ 4457541 (-) True LOC113535829
XR_004577365.1 other upstream 2438002 4459317 ~ 4459423 (-) True LOC117596196
XR_004577366.1 other upstream 2439894 4461209 ~ 4461315 (-) True LOC117596197

Expression Profile