RNA id: TU438213


Basic Information

Item Value
RNA id TU438213
length 2305
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id G369924
representative False

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2555979 ~ 2558809 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AaacatgagtgtgtgaggtcTGGGCAGTGGGGACGGCGGCCAAGTGTCGTGCCTTTAGCACGGCTGGAGTGTCACGGGTGGCCGAGGAGAACAGAAAACGCACCCTCACTTGATGAGTGGACGGTGACTATTCCCTCGATTTCCACCCAACTGTGGAACGCTGTCCCTGGGCCGAACAGAAAGGAAAGACGCAAGGGCCAAAAAAACTGCATTGGGGGCTGACttccagaaagagaaaaacgtgggcaaaaggcaaaaaaatagagagaatgGATTTAGAAATGACATCTCATAgtcctttttttgttgttcagtTGGTCTTCGAAAAAATAGTTGACGTCCTGACACCATGGGGTCTGTAGATACACCACCTTTCTCTCACCACTCCCTTGGAGAGGGGGGCTTCTTACACAGACAGGATGTGCTTGACAAACTTTCATAGTTGACAGAGCCGTTCTCGTCCTCCTGTCCTTGCATCAAAGCGTCGACCTCAGGCTCGGACATCCTCTCTCCCCCAGTGTGGACAGCACAATGCGCAGCTCAGCGCCCATCACTGTGCCGTTGCCTTCCTTGTCGAAGACACGCAGACCCTCAACGTAGTCATCGTAGGTTCCCTTCTGGATGGTATCCACAGCCTTCAGCATGGGCAGGAAAGCATCAAAGTCGATCCTCTTGTTGGCCATGTCTGAAAACAGATGATACCACTCGTTAACACCAAATCTGTGACATGCGGCACCAAGAATCACCAACATGTTTGGTAAATGAGGCTCTGTGCTAGCAAAACAGGTGGCCATTGTTCAGAGCTTCCTGTGTAGAAATCACTAGCAAACAAGTTAGCCATCAATGTGTCAGATGTAGTGCTGAGTAATTAAATTGAAGTCCAAAGCTAAGCAAGGTGACTAGCTGTTTTAGTCCATAATATGCCTTAGTTTTTAAAAGACAGTTTTAAGGATTGAGTGTGTTGATCTCCTAGATGCTAAGTTGTATAAGCTAGCAATGGAAAGGTGGCCTAAAGCTTAGCAAGATCttagcctgttttttttaaatcatttgaagGATTGTGTTGGTGTTTTGAGTTCAACTTGGTCTCCTAGCATAAAACAaattactcaaaaaaaaaaaaagaaaagaaataaccTGCATTTTTTGTAACTTTACCTCCactaatggataaaaagtttctttttttgtataagCTAGCAGTGGAAAACTAAAGTTAGACTTAATAAAGTCCATTATAAACATAATAGTCTCTTTGGGTTAAGTTATGGGACTGATTCAAAGTCCAGCACTTAGCAAGATGACCAGGTGTCCTAGCCTAtaatttatatgtatgtatatatatagatatatgtatgtatatatatatatatatatagaTTGAGAGGTTGAGGTCTTGCCTTCGGGGGATGGGTCACCCAGAATTTTCTTGACGTCCTTGTTGGTTGGGTTTTGTCCCAGAGCACGCATGATGTCAGCAATCTGGTTGTAGGCAATCTTGCTATCGCCAACTCTGTCGAAGAGACCAAAGGCCTCTTTGAAGTCTGGAGAAAGGAGATTAAGATATATTTAGGCCTAAATTTGTCCATTATATGGGATTTATCAAGGCAGCAGCATGGTGGTCACAAACACCAATGCTTTTATCCTTACAAATCCGTAATTCCTATCTATTTTAATTGCATTTCATTACCATTTTAAAGAGTGCCACTGATATCCTGGTTAAATGGTTATCCTGGTTGATTAAGAAAGTGAAGATGGTTGCCTTTGCCCTCAGCACCCTGTGCTAATTAACAAGACCAACTATGTGTTCAAGAAGACAAGGAGTGACCCTCAGTTGGCGTTGCTATTTCTATGGGTCTAAATGGAAAGTGATCCAGTGACAGATTGATGGCCTCGTGCGGACCAGCTGTTCCTCTTTCGGGCGCCATTTGGTGGTGTGTTAGCCGATACGTCTTAAGAAAGTAGCTTTCACCAAACATGGCCAAGTGAAACAGAGGAATGCTGACTGAGGCGTAATCTGCAACCGTGAGTTAACAAGATGTCTTTTTCTGGGACTGCAACTGTACTCACGCCTGTCAAAACCGGAAGGAGCGTAGCCTCCTAACTATAACACTAAATCTAAAAAGCGCTCAGAGATATGTTGGAGATTAAGGGATCAGCATGCTCATTATGGTCAAGACTTACCAGGGGACCGAGAGCAAAAAATGCTGGATCAATAGATCACATTACAGCAGTTTAGTTAGGGCCATTGCCTTACATATCCAGCATAACAGCTGCATTGAATCCTTGGATCTTTtcacttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438184 lncRNA downstream 33852 2520498 ~ 2522127 (-) True G369907
TU438165 lncRNA downstream 45017 2510756 ~ 2510962 (-) True G369891
XR_004577279.1 lncRNA downstream 210446 2343113 ~ 2345533 (-) False LOC113535806
XR_003403637.2 lncRNA downstream 210446 2343113 ~ 2345533 (-) True LOC113535806
XR_004577296.1 lncRNA downstream 310821 2244126 ~ 2245158 (-) False LOC117596129
TU438215 lncRNA upstream 448 2559213 ~ 2560060 (-) True G369926
TU438217 lncRNA upstream 2115 2560880 ~ 2562458 (-) True G369928
TU438221 lncRNA upstream 4039 2562804 ~ 2563537 (-) True G369930
TU438216 lncRNA upstream 5947 2564712 ~ 2565252 (-) True G369927
TU438282 lncRNA upstream 114790 2673555 ~ 2678270 (-) True G369980
XM_026928963.2 mRNA downstream 13113 2523115 ~ 2542866 (-) True LOC113535562
XM_026928960.2 mRNA downstream 13115 2523115 ~ 2542864 (-) False LOC113535562
XM_026928961.2 mRNA downstream 13377 2523115 ~ 2542602 (-) False LOC113535562
XM_026928728.2 mRNA downstream 40961 2501030 ~ 2515018 (-) False LOC113535442
XM_034299960.1 mRNA downstream 43543 2501030 ~ 2512436 (-) True LOC113535442
XM_026929206.2 mRNA upstream 7992 2566757 ~ 2574471 (-) True LOC113535702
XM_026929338.2 mRNA upstream 16685 2575450 ~ 2583050 (-) True LOC113535812
XM_034300345.1 mRNA upstream 58861 2617626 ~ 2633096 (-) True efnb2b
XM_026929079.2 mRNA upstream 78570 2637335 ~ 2642686 (-) True cpo
XM_034299942.1 mRNA upstream 159292 2718057 ~ 2728695 (-) True atic
TU437816 other downstream 760755 1792187 ~ 1795224 (-) True G369586
XR_004577318.1 other downstream 956235 1541362 ~ 1599744 (-) False nrp2a
TU437448 other downstream 1279166 1276021 ~ 1276813 (-) True G369242
TU437316 other downstream 1640296 911553 ~ 915683 (-) True G369125
XR_004577324.1 other downstream 2328877 202654 ~ 227102 (-) True si:dkeyp-75b4.8
XR_003403632.2 other upstream 7992 2566757 ~ 2574471 (-) False LOC113535702
TU438365 other upstream 284447 2843212 ~ 2853211 (-) True LOC117596167
XR_003403643.2 other upstream 1898670 4457435 ~ 4457541 (-) True LOC113535829
XR_004577365.1 other upstream 1900552 4459317 ~ 4459423 (-) True LOC117596196
XR_004577366.1 other upstream 1902444 4461209 ~ 4461315 (-) True LOC117596197

Expression Profile