RNA id: TU438351


Basic Information

Item Value
RNA id TU438351
length 215
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G370028
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 2783272 ~ 2790676 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTCTCCATGAAGCTGATCATCTCAGTGAAGATAATCTCACTGTCCTCCACTGCTGTCTGAGCACGGGACTGttaggaaacacacacaaaccacgcTTCCCTCTCTTACTATGACTCTGGATGACTGTTtgttcatgttgtgtgtgtgtttctaggagcagctctgtctctgctcactgctcacCTTAATCATGTTCACAgcctgtttcagctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438346 lncRNA downstream 7877 2774882 ~ 2775395 (-) True G370024
TU438341 lncRNA downstream 8637 2772626 ~ 2774635 (-) True G370023
TU438290 lncRNA downstream 88695 2694149 ~ 2694577 (-) True G369988
TU438282 lncRNA downstream 105002 2673555 ~ 2678270 (-) True G369980
TU438216 lncRNA downstream 218020 2564712 ~ 2565252 (-) True G369927
TU438334 lncRNA upstream 27927 2818603 ~ 2821314 (-) True G370019
XR_004577338.1 lncRNA upstream 55704 2846380 ~ 2853211 (-) False LOC117596167
XR_004577337.1 lncRNA upstream 55704 2846380 ~ 2853208 (-) False LOC117596167
TU438470 lncRNA upstream 158745 2949421 ~ 2984930 (-) False G370127
TU438468 lncRNA upstream 173592 2964268 ~ 2984930 (-) True G370127
XM_034299928.1 mRNA downstream 12615 2768629 ~ 2770657 (-) True LOC113535758
XM_026928808.2 mRNA downstream 15779 2758969 ~ 2767493 (-) True tuba8l2
XM_026929212.2 mRNA downstream 26035 2747268 ~ 2757237 (-) True stk16
XM_034300320.1 mRNA downstream 26142 2749928 ~ 2757130 (-) False stk16
XM_034299942.1 mRNA downstream 54577 2718057 ~ 2728695 (-) True atic
XM_026928790.2 mRNA upstream 6592 2797268 ~ 2804129 (-) False LOC113535480
XM_026928789.2 mRNA upstream 6592 2797268 ~ 2804129 (-) True LOC113535480
XM_034300419.1 mRNA upstream 17641 2808317 ~ 2811609 (-) True LOC113535756
XM_026928792.2 mRNA upstream 33317 2823993 ~ 2827600 (-) True LOC113535483
XM_026928791.2 mRNA upstream 42937 2833613 ~ 2838789 (-) True LOC113535482
XR_003403632.2 other downstream 208801 2566757 ~ 2574471 (-) False LOC113535702
TU437816 other downstream 988048 1792187 ~ 1795224 (-) True G369586
XR_004577318.1 other downstream 1183528 1541362 ~ 1599744 (-) False nrp2a
TU437448 other downstream 1506459 1276021 ~ 1276813 (-) True G369242
TU437316 other downstream 1867589 911553 ~ 915683 (-) True G369125
TU438365 other upstream 52536 2843212 ~ 2853211 (-) True LOC117596167
XR_003403643.2 other upstream 1666759 4457435 ~ 4457541 (-) True LOC113535829
XR_004577365.1 other upstream 1668641 4459317 ~ 4459423 (-) True LOC117596196
XR_004577366.1 other upstream 1670533 4461209 ~ 4461315 (-) True LOC117596197
XR_004577367.1 other upstream 1672432 4463108 ~ 4463214 (-) True LOC117596198

Expression Profile