RNA id: TU438554


Basic Information

Item Value
RNA id TU438554
length 2206
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G370207
representative True

Chromosome Information

Item Value
chromosome id NC_047620.1
NCBI id CM018566.1
chromosome length 19313417
location 3069998 ~ 3072601 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTAACAAAACCCAGATATGCAAtcctttctgatttttttttatttgttttttttttttcttttcattaaaaaaagaaacgtcGTAAGGCATGTCTGCTCTTCATGTCGACTCAAATCTTCCAAAAATCCTTCATAACACACTTTAACTGTGATGTAAACGCAGATCAAGTCATATACAGCCATAACCAATATTAATGTCTAACTCAAAACCAAAGTGGATTGTGGGGAGGAAAATGcaattaataattcatatacatttttattttttattttatttcctctctgcatcagcaaaaatgaaacaaagctgCAAAAatactccaacacacacacacactgtgtgtgtgcgtgtgtgttttagggAATAATATAGGGGAAATGATGAATGAGTGGAGTAAAGAGTATGTCATCACTGTACATGTCGTATAGTAGCAGGAtggtttggaacacagccatAAGCAGTCTTAGGATGACATGATGATTGCTAAAGGCTTAGCTAGCTGAGCGAACACTGCGCACTTAACAATATGTACCACAGACAATGGTCTCATTTGTCAGACTATTAGTGcagtgatttgggacacagccatgGAGAGAGTGGAACACAACCCCAGCCATGGCCTCTGTCTCAAACTAGCTGCTACTGTACTACACATCACTGAAGTCTGTTAGTTATACTGTACTGTTTGTAGTGTAGTGATTCGGGACACAGCCATGAGCCGTGACCAGGAAATGATTGTAATGATTGTAGAACTGCACAAAGGATTCTAGACTCGCGAAGTGGACTCTAGAACTGCACTGACAATAATCAGATTCCAGAGGATTCTAGAAAGCTTCTGGAACTGTATTGAAAGCAATCTGCTACTACAGGATCATGGAGACAAGGCACTGATTCTAGAATGCACACAGAGGATTCAAGAACCTGCAGTGAGCATTCTAGAATCACACAGTGGACTCTAGAACTGCAGTGACAATCAGATTCCAGAGGATTCTAGAACCACACCATGGAATCCAGAAACACAATGAGGATTCTAAAACCTTCAGGTATAGGTTTTAGTAGTGTGCTGAAAGCAATCTGCTCGTACGGGATTATGGGAATCCTATAACCACAACAAGCATCTCAACTGAAACGGGGATTCTAGAACACACAGAAAAGATTCAAGAACCTGCACTGAGGATTCTAGAGCCCTCCTTAAAACTACTTGAAAGTCATTATAATATGATAGGACTGCACTGATGATTCTAGAATCACACAGAAGAATGGGCACTGATGATAATCACATTCCCAAAGATTCTAGAACCACTTGAGGACTCTAGAGCTTCAGAAAGGATTGTTAAAGGTTTTTAGAATTGTATTGAAAGAAATTTGCTTCTAAAGGATTATGGAGATTCTATGACAATAAGGATCCTGCTTTGATTCTAGAACCCACACAGCTAACCCAAGACTGACAACAATTTACGGGATTCTGAATATTACAAatccacacagaaaaaaaatgtagaattttatAACCGAATCAAGATTCTACAACTGGCCTGATGCCTCTAGAACCACATTAAATGAGAGTCTGGAGAATTCTGGAAGATTTAGAAAAAGCACAGAGGCTTCAAGGACTACACTAAAAGCCATTCGATGTTAGCGGATTCTGACAGGATCTAGAACCACAATGAGGATTCTAGAATCATATGAAGAACTAGTCCACAGCACTTGGGAACCCAATGATGCTACTCTAGAACTGCACAGAGCCGCACTGATGATTCTGGGGGAATCTACACAATAACAGAACCACACAATGGGTTCCAGTACTACAATAACGAGTCTAGAATCACTGAGGATTCTCGAATTTCTCGACTATCTGGATGGAAAACAcactaaataaacactaaacaaaaacactaaatgGGAATTCTGATTCATTTCAACCGAGAGTTAGATTTAAACTCAGGGCTCCACCAAAAACGTTCATTTTAAAGCAAGGCCCAAATCAGATCTGCGTAATTTTTGAGTCTGTATGTTaaaattgtgtgaaaatgatgtgtttaaaatgaatgttcATAACATTCACAAGATTTCAAAGTGCTTTTAGAACAATCACCAAGTCATAATGTTGAAAATTAGGATAAATATAAAGATTGTGATGAAATACACATATATGCTAAAATTCTGCGTAATTGCATATGCATGAATGTAGCAcaggttttaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577320.1 lncRNA downstream 17796 3039174 ~ 3052202 (-) True LOC117596157
TU438470 lncRNA downstream 85068 2949421 ~ 2984930 (-) False G370127
TU438468 lncRNA downstream 85068 2964268 ~ 2984930 (-) True G370127
XR_004577338.1 lncRNA downstream 216787 2846380 ~ 2853211 (-) False LOC117596167
XR_004577337.1 lncRNA downstream 216790 2846380 ~ 2853208 (-) False LOC117596167
TU438584 lncRNA upstream 102543 3175144 ~ 3176945 (-) True G370237
TU438619 lncRNA upstream 152419 3225020 ~ 3225235 (-) True G370272
TU438629 lncRNA upstream 157348 3229949 ~ 3230185 (-) True G370282
TU438655 lncRNA upstream 393046 3465647 ~ 3465861 (-) True G370308
TU438674 lncRNA upstream 531753 3604354 ~ 3604585 (-) True G370327
XM_034300420.1 mRNA downstream 177913 2874908 ~ 2892085 (-) True LOC117596192
XM_026928791.2 mRNA downstream 231209 2833613 ~ 2838789 (-) True LOC113535482
XM_026928792.2 mRNA downstream 242398 2823993 ~ 2827600 (-) True LOC113535483
XM_034300419.1 mRNA downstream 258389 2808317 ~ 2811609 (-) True LOC113535756
XM_026928789.2 mRNA downstream 265869 2797268 ~ 2804129 (-) True LOC113535480
XM_026928711.2 mRNA upstream 10469 3083070 ~ 3170485 (-) True gpc5a
XM_034299954.1 mRNA upstream 539118 3611719 ~ 3618120 (-) True LOC113535432
XM_026928713.2 mRNA upstream 539118 3611719 ~ 3616892 (-) False LOC113535432
XM_034300309.1 mRNA upstream 1415548 4488149 ~ 4504739 (-) True LOC113535753
XM_026928684.2 mRNA upstream 1438669 4511270 ~ 4517988 (-) True cnpy3
TU438365 other downstream 216787 2843212 ~ 2853211 (-) True LOC117596167
XR_003403632.2 other downstream 495527 2566757 ~ 2574471 (-) False LOC113535702
TU437816 other downstream 1274774 1792187 ~ 1795224 (-) True G369586
XR_004577318.1 other downstream 1470254 1541362 ~ 1599744 (-) False nrp2a
TU437448 other downstream 1793185 1276021 ~ 1276813 (-) True G369242
XR_003403643.2 other upstream 1384834 4457435 ~ 4457541 (-) True LOC113535829
XR_004577365.1 other upstream 1386716 4459317 ~ 4459423 (-) True LOC117596196
XR_004577366.1 other upstream 1388608 4461209 ~ 4461315 (-) True LOC117596197
XR_004577367.1 other upstream 1390507 4463108 ~ 4463214 (-) True LOC117596198
XR_004577360.1 other upstream 1451901 4524502 ~ 4524784 (-) True LOC117596183

Expression Profile